PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_30592-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 246aa MW: 27509.5 Da PI: 8.8372 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.8 | 7.4e-20 | 99 | 142 | 49 | 92 |
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 asdkc +ekrktingddl+w+++tlGfedyveplk++lk y++ TRIUR3_30592-P1 99 RASDKCVKEKRKTINGDDLIWSMGTLGFEDYVEPLKLHLKLYQQ 142 69***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.05E-12 | 99 | 147 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.8E-15 | 99 | 143 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.5E-7 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 1.5E-7 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MARSNTSGAP WGDTADFFSS PRRVLFLRVV AAGAGCALLA PAEDDEGEDA EAGEGGGGGG 60 LRLVAIRWAR VTCALKNKRG DMVSRSGTST LVCDPGRRRA SDKCVKEKRK TINGDDLIWS 120 MGTLGFEDYV EPLKLHLKLY QQAFEFKRLL LYYDNAVLFR LAMEQKERHC YFNKREDAFV 180 HPVRTYPEMC LANLQVTPTL KDQIREAQLL DTMVKKVKHD IRAYPNTSAN ALMTKTFYSS 240 RPDCGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078742 | 1e-51 | KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8A4C7 | 0.0 | M8A4C7_TRIUA; Nuclear transcription factor Y subunit B-4 | ||||
STRING | TRIUR3_30592-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25630 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.8 | 8e-20 | nuclear factor Y, subunit B1 |