PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_30537-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24231.2 Da PI: 7.7255 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 30 | 49 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+ksF+r n++ H+ TRIUR3_30537-P1 30 FSCAVCNKSFNRFNNMQMHM 49 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.7e-05 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ TRIUR3_30537-P1 121 YACRRCGKRFAVRGDWRTHEKNC 143 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-5 | 25 | 51 | No hit | No description |
PROSITE profile | PS50157 | 10.138 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.72 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 30 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0032 | 30 | 49 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 84 | 116 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-7 | 107 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.3E-7 | 107 | 141 | No hit | No description |
SMART | SM00355 | 58 | 121 | 141 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.704 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAHPNSDIVT VPSQYWIPSA AEILVGSTQF SCAVCNKSFN RFNNMQMHMW GHGSQYRKGS 60 ESLRGAVTVG PAAPPPSLMR LPCYCCAEGC RNNIDHPRAR PLKDFRTLQT HYRRKHGARP 120 YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHIIESV 180 TVDEDEDEDD EHDDGDLHLY DENGNAGDGS DMVLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373299 | 0.0 | AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172443.1 | 1e-151 | zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 4e-96 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | M8A703 | 1e-161 | M8A703_TRIUA; Protein TRANSPARENT TESTA 1 | ||||
STRING | TRIUR3_30537-P1 | 1e-162 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-98 | C2H2-like zinc finger protein |