PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30534-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 465aa    MW: 52878.8 Da    PI: 9.2253
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30534-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092072451755
                      HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      e+ +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  TRIUR3_30534-P1 207 EMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 245
                      5566789*****************************885 PP
2ELK36.79.1e-13165186122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+Ll+KYsgyL+sLkqE+s
  TRIUR3_30534-P1 165 ELKHHLLKKYSGYLSSLKQELS 186
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.3E-2858109IPR005541KNOX2
PfamPF037916.0E-2364107IPR005541KNOX2
SMARTSM0118818006787IPR005539ELK domain
PfamPF037891.1E-9165186IPR005539ELK domain
SMARTSM011884.9E-7165186IPR005539ELK domain
PROSITE profilePS5121311.331165185IPR005539ELK domain
PROSITE profilePS5007112.665185248IPR001356Homeobox domain
SuperFamilySSF466894.06E-19186261IPR009057Homeodomain-like
SMARTSM003896.1E-13187252IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27190249IPR009057Homeodomain-like
CDDcd000866.13E-11197249No hitNo description
PfamPF059202.2E-16205244IPR008422Homeobox KN domain
PROSITE patternPS000270223246IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEEIGHHFGL GATAHGQHHS QLPWGSSPLS AVGAPPEVLA RLTAVAQDLE LRQRTALGSL  60
GTATEPELDQ FMEAYHEMLV KYREELTRPL QEAMEFLRRV ETQLNSLSIS GRSLRNILSS  120
GKAKRDTENL PGSKKQPKEN KREDQEGSGG ETELPEIDAH GVDQELKHHL LKKYSGYLSS  180
LKQELSKKKK KGKLPKDARQ QLLSWWEMHY KWPYPSESQK VALAESTGLD LKQINNWFIN  240
QRKRHWKPSD EMQFVMMDAY HPPNAAFYMD GHFVNDSGLY SAPVTHMLST ADALVPRHPP  300
FLPLFSPFPV QPWPSAFQAI ETRLLYEAEY PVSSNMWVPG AWRISAGGVP VPTLPTGAAR  360
RAEIACIRVN LPQAAREGPR DVHDSPLWEP YFRRRHAEQL EATNDVVPSR RLNSEGRRRW  420
WGVPDRTLEA ILEYIEGGNT PRLEYPAPPS FSRRRGSSWP PRYAR
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2244980.0AF224498.1 Triticum aestivum KNOTTED-1-like homeobox protein a (knox1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147582.11e-151homeobox protein KNOX3
SwissprotQ434841e-149KNOX3_HORVU; Homeobox protein KNOX3
TrEMBLM8AF240.0M8AF24_TRIUA; Homeobox protein KNOX3
STRINGTRIUR3_30534-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-84KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Müller KJ, et al.
    The barley Hooded mutation caused by a duplication in a homeobox gene intron.
    Nature, 1995. 374(6524): p. 727-30
    [PMID:7715728]
  2. Krusell L,Rasmussen I,Gausing K
    DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
    FEBS Lett., 1997. 408(1): p. 25-9
    [PMID:9180261]