PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_30192-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 340aa MW: 35988.9 Da PI: 4.61 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.9 | 8e-37 | 36 | 91 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+Crr+WtkGG+lrnvPvGgg+rkn++ TRIUR3_30192-P1 36 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRHWTKGGSLRNVPVGGGCRKNRRG 91 68***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 21 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-31 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.36 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MLSSHCESML AYAAAAGRRA MLVDPRRYRP NVEVAPNCPR CDSPNTKFCY YNNYSLSQPR 60 YFCKGCRRHW TKGGSLRNVP VGGGCRKNRR GKSSVRSASD SFSGVRDATF GHGGFPGPLR 120 PDMVLEGMVG NPANPGQVMH DVPTAPDGSS IDLAMLYSKF LNNQQPAGDG SLQPAGAGSL 180 GGSVTPESAG GHVDETFDTF SASSDMSPAG VLAPAQFDAS PDGFLEWSRP VSSADPTCTA 240 SPATATTMLC TDESVQAALG ELNFAMDQSC FDSLGLPTDG AAANLSSWCS IVPSLSTWEE 300 PKYDSLDSFP DDTLSLHDGI LAADHDWSAD CQGLEALYMP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167339.1 | 0.0 | uncharacterized protein LOC109752821 | ||||
TrEMBL | M7ZKY5 | 0.0 | M7ZKY5_TRIUA; Dof zinc finger protein DOF3.5 | ||||
STRING | TRIUR3_30192-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 7e-37 | Dof family protein |