PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30130-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 540aa    MW: 60487.1 Da    PI: 7.5999
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30130-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.3e-25183237156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      kp++ Wt  LH++F+ea++q+ G ++A+Pk+ilelm+v+ L++e+++SHLQkYRl+
  TRIUR3_30130-P1 183 KPKMTWTIALHNKFLEAINQI-GLDRAVPKKILELMNVDHLSRENIASHLQKYRLH 237
                      79*******************.********************************97 PP
2Response_reg72.61.6e-24121201109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+++ +++l+ +l++ +y + +++ dg+ al++l   ++++Dl+++D++ p+mdG++ll+ ir e  +lp+ +++   +++ + + ++ 
  TRIUR3_30130-P1  12 VLVVDDDRVCLMVLEALLRRCKY-QPTTVMDGKTALRMLmaGKQQFDLVITDVRKPDMDGFKLLELIRLEM-DLPVTMLSVDCDKKVVMKGIDH 103
                      89*********************.9999**********9555555**********************9976.********************** PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga+df +Kp+ + el +
  TRIUR3_30130-P1 104 GASDFMVKPVRIHELKN 120
                      ************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.0E-1161537IPR017053Response regulator B-type, plant
SuperFamilySSF521724.41E-328130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.2E-369142No hitNo description
SMARTSM004481.9E-2710122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.97711126IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2012120IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.52E-2513125No hitNo description
PROSITE profilePS5129410.622180239IPR017930Myb domain
SuperFamilySSF466894.12E-18181240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25182241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23183237IPR006447Myb domain, plants
PfamPF002491.4E-5185235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
AAEDKFPEGL RVLVVDDDRV CLMVLEALLR RCKYQPTTVM DGKTALRMLM AGKQQFDLVI  60
TDVRKPDMDG FKLLELIRLE MDLPVTMLSV DCDKKVVMKG IDHGASDFMV KPVRIHELKN  120
IWQHVQRWRN PKAISHISDH DNDVQRAQPV TTDKSKYSGN KRNVGDDSSE NNEGTHISAI  180
HRKPKMTWTI ALHNKFLEAI NQIGLDRAVP KKILELMNVD HLSRENIASH LQKYRLHLKR  240
VKSNPSSDAY ERWNSSYNMN NKGNFMHNHE HGRWSVSSGD TASWSTNKYG STGQLAPPMN  300
IQSNFYTGSY LHDRRMPKYF GTLPSDARRF TGSADPPVSL YDNIPNEIIS DEFPSFNYSN  360
SRANIMRGKI MEISKGKPPS NLQSSFTNTT VGGGRSLVAS QVNFPHSNQL ESYAMSSGRL  420
PVQNEKAPFI SNTTSVGGFT EQMAPFNMAS YISSLGTMLN GSSALDASRT STNDAHLVNS  480
ERTTSMLHTL QTDDFVSLTQ LHDGGDGASI VPMQEGTLNQ QPLNDHLNEI SAFSMDDIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21181241363ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166370.10.0two-component response regulator ORR24-like
RefseqXP_020201549.10.0two-component response regulator ORR24-like
TrEMBLT1NHL40.0T1NHL4_TRIUA; Two-component response regulator
STRINGTRIUR3_30130-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-67response regulator 12