PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29632-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 226aa MW: 23563.3 Da PI: 6.8807 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.1 | 7.9e-05 | 89 | 124 | 2 | 37 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkkl 37 rk+ +++k+q +Lee+F+ +++++ + e + +++ TRIUR3_29632-P1 89 RKKLRLSKDQAAVLEECFKTHHTLTPVDCEYMKRWC 124 788899*******************99888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 73 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00340 | 9.6E-16 | 113 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.2E-7 | 115 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAPQSLDLGL SLGLGLVSQP SQPSFWYSGG NVAADQEVGP TPTAAAVEER RCSPGSPASS 60 GSGSGLKRGA ERSAGSGDED QDDDGGNARK KLRLSKDQAA VLEECFKTHH TLTPVDCEYM 120 KRWCEQLAEQ NRRLEKEVAE LRALKAAPPA HNGASAGPLT TLTMCLSCKR VASTSSASAC 180 TVPSFSSNAG TGMPMPSPVA LPEHRQFFCG FRDTGATYGS SAGLAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366997 | 1e-140 | AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170044.1 | 1e-109 | homeobox-leucine zipper protein HOX28-like | ||||
Swissprot | A2Y931 | 1e-34 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 1e-34 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | T1NG90 | 1e-164 | T1NG90_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_29632-P1 | 1e-165 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 2e-24 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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