PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29406-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34463.9 Da PI: 5.246 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.2 | 2.1e-29 | 55 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G++F+Ptd el+ e+L+ kv + ++ + +i e+ +i++++P++Lp +k + + +fF+k +++y gkrk+r+ TRIUR3_29406-P1 55 LPAGVKFDPTDLELL-EHLEGKVGRAAshvlID--DfipTIGEAqGICYTHPENLP-GIKMDGSTGHFFHKVSNAYVVGKRKRRKisnsdhtvc 144 799************.99*****9998554422..23334777768**********.666778899******************8677777665 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 ++ +W++tgk++++l+++g +g kk+Lv+y ++ k+ekt+W mh+y+l TRIUR3_29406-P1 145 DENIRWHKTGKSRSILDNNGVIKGWKKILVLYigyRKGGGKTEKTNWRMHQYHL 198 45788***************************65544555668*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-32 | 40 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.653 | 55 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-13 | 56 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAEFFRSLIV TTKTIATMII HPPLCQVEEL LAWMECPNCK YRIDNTDVLS QWPGLPAGVK 60 FDPTDLELLE HLEGKVGRAA SHVLIDDFIP TIGEAQGICY THPENLPGIK MDGSTGHFFH 120 KVSNAYVVGK RKRRKISNSD HTVCDENIRW HKTGKSRSIL DNNGVIKGWK KILVLYIGYR 180 KGGGKTEKTN WRMHQYHLGV DQDEKQEELV VSKVFYQVQS MNAGQSLVCG VSEEFDSFAG 240 EDDPTTTMTY PLQTRCPNGS PSGTEQNQDM NLESQDSMEM WLASVLTEDE EGFEVAEQRK 300 EAGFSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187618.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 8e-68 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M7ZFB0 | 0.0 | M7ZFB0_TRIUA; NAC domain-containing protein 8 | ||||
STRING | TRIUR3_29406-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-70 | NAC family protein |