PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29290-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 568aa MW: 63393.3 Da PI: 7.3252 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l TRIUR3_29290-P1 35 KGGWTPEEDETLRKAVTVFKGKNWKRVAEFFP-DRTEVQCLHRWQKVL 81 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G+ W+ Iar + gR +kqc++rw+++l TRIUR3_29290-P1 87 KGPWTQEEDDTIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 59.7 | 6.3e-19 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIUR3_29290-P1 139 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 181 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.265 | 30 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-18 | 33 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 37 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.78E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 28.642 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-30 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-16 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.48E-14 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 94 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 137 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 138 | 186 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.338 | 138 | 188 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-16 | 139 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-13 | 141 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MAQQVAAFSI QFPYLDTFSD GKHGLRISGP VRRAKGGWTP EEDETLRKAV TVFKGKNWKR 60 VAEFFPDRTE VQCLHRWQKV LDPELIKGPW TQEEDDTIIQ KVKEHGPTKW SVIARSLHGR 120 IGKQCRERWH NHLDPQIRKE AWTFEEEQVL VDAHRMHGNK WAEIAKLLPG RTDNSIKNHW 180 NSSVRKRLDE YDTGAARNVP VHVSHNDLKQ PAIALPAENY IDLNEVPNIS LRNHSGIVDH 240 SDPTHSPRVC SLKNIKGCSD FLSLSMPTAQ PVTSCQASAA DDSAVALAIM GMKMDSGRDK 300 DIELNFVCQK GLQINLSNEK GLEIDPVTAK PDGRESTLVK EAQSFGSLCY QIPKLEDIDL 360 VRSPVLSRHH GSEHGVDGFQ SPTGYATPSP TDGKQSDQLS VESILKSAAE NFPGTPSILR 420 RRKRDKPTPS QDTDFKIDAN SDCFDTPKAN CTTYSPHSFK TASFLSLGRL DDQQLPSVLG 480 KFDVSPTYRL RSKRMAVLKT VEKHLDFSAD AMDTCDMVGT LKSSCRNTES INASSDISSA 540 HDRRINGHMI GLETLTSDFA YTTKLDAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-68 | 34 | 188 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-68 | 34 | 188 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 426 | RRRKRDKP |
2 | 420 | 425 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363512 | 0.0 | AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147038.1 | 0.0 | uncharacterized protein LOC109732249 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | M7ZA67 | 0.0 | M7ZA67_TRIUA; Myb-related protein 3R-1 | ||||
STRING | TRIUR3_29290-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 3e-96 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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