PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29260-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39226.3 Da PI: 7.6467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157 | 7.9e-49 | 33 | 159 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kv+gk++++ + i++vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v++ TRIUR3_29260-P1 33 MPGFRFHPTEEELIEFYLRRKVDGKRFNI-DLIASVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVV 125 79***************************.99***************888889************************************99887 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy g+apkg +++W+m+eyrl TRIUR3_29260-P1 126 eGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 159 57888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-54 | 32 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.393 | 32 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGGSVPDHHH QQHDGEVDGG QLQHGGEHVE TVMPGFRFHP TEEELIEFYL RRKVDGKRFN 60 IDLIASVDLY RYDPWDLPAL ASIGDKEWFF YVPRDRKYRN GDRPNRVTPS GYWKATGADR 120 MVKVVEGNRS IGLKKTLVFY VGKAPKGLRS SWIMNEYRLP HGATPPAMFR SAASVASLSS 180 TTSTEEDGTS LYHHHLKGHN NPAVMQLHSS THATLLNTNS SAMATIPIDE LSRAIGSYSQ 240 ASNPNQPTAP LQGPLLNFPS LEKIWDWNPL LESPKVCTSF KLVYPSFHGG SGRNPSEAAA 300 TSIFIPLVSP HLEELHAKPA SPAPILVKVV AGFFTSSLSH TPPSPHPTET NAMVVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 34 | 159 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 34 | 159 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 34 | 159 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 34 | 159 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 34 | 159 | 22 | 145 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 34 | 159 | 19 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 34 | 159 | 19 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY672069 | 0.0 | AY672069.1 Hordeum vulgare subsp. vulgare NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156931.1 | 1e-119 | NAC domain-containing protein 35-like | ||||
TrEMBL | M7ZDL0 | 0.0 | M7ZDL0_TRIUA; Putative NAC domain-containing protein 94 | ||||
STRING | TRIUR3_29260-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-79 | NAC domain containing protein 35 |