PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29250-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35990.9 Da PI: 9.8803 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.1 | 8.2e-54 | 71 | 199 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhP+deelv +yL +k++g++ v i +vd++k+ePwdLp+++ + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd+++l TRIUR3_29250-P1 71 MPPGFRFHPRDEELVLDYLLHKLTGRRAYG-GVdIVDVDLNKCEPWDLPEAACVGGREWYFFSLRDRKYATGQRTNRATRSGYWKATGKDRAIL 163 79*************************877.555***************7666789************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++++lvg++ktLvfy+grapkg++t+Wvmhe+rle TRIUR3_29250-P1 164 AHGEALVGMRKTLVFYQGRAPKGTRTEWVMHEFRLE 199 *********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-56 | 66 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.077 | 71 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 72 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEKEVDDMTE DRVRWPGTST RWRSLGRRPL IGRWTAPTRG RRHVGGHVKR PPPGDVNVAQ 60 AAAMESPAAR MPPGFRFHPR DEELVLDYLL HKLTGRRAYG GVDIVDVDLN KCEPWDLPEA 120 ACVGGREWYF FSLRDRKYAT GQRTNRATRS GYWKATGKDR AILAHGEALV GMRKTLVFYQ 180 GRAPKGTRTE WVMHEFRLEE ERHRHHQQQK GGAAAAEARC QLKLDLPTMP PLAPLIDAYI 240 AFDSGTAMNT IEQVSCFSGL PALPLRGSMS FGDLLGWDNP EKKAIRTSLS NMSSNSNSKL 300 ELTPNWNQEN GLSQMWTPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-44 | 71 | 198 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM037184 | 0.0 | HM037184.1 Triticum aestivum NAC transcription factor (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158480.1 | 1e-168 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 5e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M8AQS7 | 0.0 | M8AQS7_TRIUA; NAC domain-containing protein 21/22 | ||||
STRING | TRIUR3_29250-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-59 | NAC family protein |