PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29043-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 22943.5 Da PI: 10.4887 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 60 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ TRIUR3_29043-P1 60 RGHWRPAEDMKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 105 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 113 | 155 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ TRIUR3_29043-P1 113 RPFSDEEEERLMAAHRFYGNK-WSMIARLFP-GRTDNAVKNHWHV 155 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.929 | 55 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-28 | 59 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-14 | 59 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 60 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-26 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.97E-13 | 63 | 104 | No hit | No description |
PROSITE profile | PS51294 | 24.958 | 107 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-13 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 112 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 114 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.94E-11 | 114 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVAANDDQAS SSSSSKGGGA VLTTGTATID KGYLGGGGAG SNAADPQESS SSGQSRHAAR 60 GHWRPAEDMK LRELVALYGP QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI SKRPFSDEEE 120 ERLMAAHRFY GNKWSMIARL FPGRTDNAVK NHWHVIMARK YREQSIAYRR RKLNQAVQRT 180 LDSSSGVAAG PGAASNSVHD GRLSWPDAMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 59 | 160 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-142 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184298.1 | 1e-117 | transcription factor MYB21-like | ||||
Swissprot | Q9SEZ4 | 6e-72 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | T1NEN5 | 1e-153 | T1NEN5_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_29043-P1 | 1e-154 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-73 | myb domain protein 105 |
Publications ? help Back to Top | |||
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