PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29035-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 434aa    MW: 47000.9 Da    PI: 4.8203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29035-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11147189754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  TRIUR3_29035-P1 147 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVNEL 189
                      89*********************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-15143208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9146189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-15147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-4147194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVAASALLFC GGEGAEASSG TDIAGPFLQQ PMAPPQAAPP HRPHEEFNFD CLSEVCNPYR  60
SSAGVVPGPG VVHGVGQSLA QYPLHDAMAE NGTSGSKLHH GGGGSSSSPP FVLAGVAGEG  120
SEMTRGVFSG AHPRSKLNGG TTSKNLMAER RRRKRLNDRL SMLRSIVPKI TKMDRTSILG  180
DTIDYVNELT ERIKTLEEEI GSTPEELNLN RLNTRKNFSG VSSEEMPMRN STKFVIEKQV  240
DGETRIDICC ATSPGVLIST VSALDVLGLE IEQCVVSCFG DLVMKASCSQ MSEQPERLQL  300
SSFIAYEAKK KEAECYDTPE QPERRRLSSA VADEAEKEAG CSDGPEQAKK EAECCHGPEQ  360
PERRWSALEL RKAMREVYSP SPQPEDPDRA LDPGLEEDLD TFVELIDRTF YKLSCNGALV  420
AIIADYPGLL PASH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148155ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150230.11e-159transcription factor bHLH61-like
TrEMBLT1NEM70.0T1NEM7_TRIUA; Uncharacterized protein
STRINGTRIUR3_29035-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-46beta HLH protein 93