PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28948-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 872aa    MW: 96536.9 Da    PI: 6.1832
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28948-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-2367168199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   ++
  TRIUR3_28948-P1  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WN 156
                      99*****************************86555544..8************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  TRIUR3_28948-P1 157 DNNQLLLGIRRA 168
                      77778***9997 PP
2Auxin_resp120.71.1e-39193276183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIUR3_28948-P1 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-4852196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-4259182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-2166167No hitNo description
SMARTSM010191.0E-2467169IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0767169IPR003340B3 DNA binding domain
PfamPF023623.2E-2267168IPR003340B3 DNA binding domain
PfamPF065071.4E-34193276IPR010525Auxin response factor
SuperFamilySSF542773.92E-8718804No hitNo description
PfamPF023092.9E-8720814IPR033389AUX/IAA domain
PROSITE profilePS5174522.754728812IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MESQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELVAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  300
TYPMYSSPFP MRLKRPWPTG LPSLYGTGGK EDDLTSSLMW LRDGANPGFQ SFNFGGLGMS  360
PWMQPMMDSS LLGLQPDMYQ AMSAAAFQNT TKQVSPTLLQ FQQPQNIAGR SALLSSQILQ  420
QVQPQFQEMH HQNINDSAIQ GHNQSEYLQQ QLQRCQSFNG QKSPPPQQQE SHHQHQQQQS  480
QCMQTPQHQQ MQEQKHSPDF QCVPNGLSVF SQLSSTNQSP PSTLQTVSAF SQQQNLQDRN  540
ISSLSPSNVP SMHDTLRPFP SEAGSNLQGV PRTTPVPVSD PWSSKRVAME SVIPSSSHVN  600
SPHIQHLDSA PSNIPQSSSL APLPGRECLV DQDGNSDNQN HLLFGVNIDS QSLLMQGGIP  660
SLQEDNGCIA SLQDDNDSST IPYSTCNFLS PSQNDFPLNE ALASSGCLDE SGYASFSENS  720
DHVNQPTAAF VKVYKSGAFG RLLDITKFSS YHELRSEVGR LFGLDGQLED PARSGWQLVF  780
VDREDDILLV GDDPWQEFVN SVSCIKILTP QEVQQMGKQG IDLLSSAPAR RLGNSCDNYA  840
GRQESRSLST VIASNVASTV NPLHAFIGGQ AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-138330294393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM7Y6G10.0M7Y6G1_TRIUA; Auxin response factor
STRINGTRIUR3_28948-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]