PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28933-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33112.7 Da PI: 8.193 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 14 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg d++++s TRIUR3_28933-P1 14 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTSSGFWKATGIDRPIYS 106 69***************************.99***************445556889************************************** PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g vglkk+Lv+y+g+a kg+ktdW+mhe+rl TRIUR3_28933-P1 107 AggsgSGVSVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 144 977766677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.669 | 13 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-56 | 13 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-25 | 15 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
GGGGDEEDDD DVVLPGYRFH PTDEELVTFY LRRKVARKSL RIEVIREMDI YKHDPWDLPK 60 ASTVGGEKEW YFFCLRGRKY RNSIRPNRVT SSGFWKATGI DRPIYSAGGS GSGVSVGLKK 120 SLVYYRGSAG KGTKTDWMMH EFRLPPAAAT NASPSMQEAE VWTICRIFRR TITYRKQQQP 180 GXRPRPPPAP SIPQQQQQHQ YVSQTSTVDS GNFLYEDNMH NQQFQGEWNA APAAPVPEQK 240 QQNPLSTAVA LHQNDHSHAV AANDFYKVEG YLEEIARMLE VTDSAGLYDY RS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 15 | 170 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 15 | 170 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 15 | 170 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 15 | 170 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 15 | 170 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-48 | 15 | 170 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 15 | 170 | 19 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360432 | 0.0 | AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07. | |||
GenBank | AK374728 | 0.0 | AK374728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3074N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195561.1 | 1e-177 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-81 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | T1NED3 | 0.0 | T1NED3_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_28933-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-74 | NAC domain containing protein 42 |