PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_28872-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 1042aa MW: 111184 Da PI: 10.5856

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_28872-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6e-08	280	324	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++WT++Ed l +v++ G g+W I r+ + +Rt q+ rw TRIUR3_28872-P1 280 KAWTKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 324 68*****************************9999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-10	273	331	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.492	274	332	IPR017930	Myb domain
SuperFamily	SSF46689	3.73E-11	277	330	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-6	278	330	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-6	280	324	IPR001005	SANT/Myb domain
CDD	cd11660	3.89E-12	285	329	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence Send to blast
MVAAAAGAKR KRDLSEDEVY LILHKSVLLL DLRATRRFSP ARPRVLVRRS ILLQEVAQHT 60 ERRSINWRAL VAKTATGITS AREYQMLWRY IAYGHDFVEN VEDGSPQPLG DESDLECEIE 120 PSPKPSNEAA AEASRFAKVS LHGSGATQLV ADRHSWCFDH NQTARMLPGV LLQRELNVVI 180 LHQMTKTTLF CIRWKTLRIL MYGPSREQGS SHRANSDVPL LNTPNEKIPR VSSDKQLAQS 240 HRLTNGTGPV SNSKQAPHTG LSPDSFDGNG PHNKKTKKTK AWTKDEDAEL MAGVHKCGEG 300 NWLDILRKYN FDSTRTYGQL SQRWAVISRR QATTKPAKAK PVTGGYDMKA TQKAFFMALD 360 MPMGKPGGLS TLRSGASQQS TQHPAPVFGA AAPELKSATP SSSFSLPVPV PSAAPGPVSA 420 QVQVQPPRAQ QVPSQAAPSK VSNASIKSRN SSKKQTAQAN PTNAPSSIQA AAIAAGGRIA 480 TASIATNLLK AAQSPQAVHI RSRGKGSSKT STSSKASTMA GEPGTQTGGA QHPELPNCSA 540 PTQSPTVLIT QSTEQVNVVP EVAGVNPPEQ SASAHLLEPD RTLSTTPVPG PCDNMEIDDD 600 STFCVVTMED LFPEDVKQPE TVKQPEMVRQ PETVRQPEMV RQTETVSQPE MVRQTETVRQ 660 PEMVKQPETV RQPEMVDPKA EEMIDPKDAD MLEFDRFVAQ GCLTTDYSDK SKGVKIAPGA 720 QGATASQKKK QLPTVGKSIP VFRAPVTMKK TKALPSHGAT LASTVASSGL VGTGNAGVLS 780 KAIYRKPAGP GTTGKQNSGT PARNTAPGTG TPPVRNTAPG TGTPPVRNTA PGTGTPPVRN 840 TAPGTGTPPV RNMAPGTGTP AVRNTAPGTG TAARNSLTGT GTPQARNLLT GTGTPPARNA 900 APVTGATPAR NLLTGMGTPP AIRQHNPAPG RDHQVRCRAT CSESVDSLSP LRVPFNLVWS 960 WLACLWTVAA GMGSAVGRVA PLEDMDGGLR LPPALRTGYY KPRPVTTERF RTIQASKITT 1020 PARKTTPTFH ISHTPKAIIQ RR

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence Send to blast

MVAAAAGAKR KRDLSEDEVY LILHKSVLLL DLRATRRFSP ARPRVLVRRS ILLQEVAQHT  60
ERRSINWRAL VAKTATGITS AREYQMLWRY IAYGHDFVEN VEDGSPQPLG DESDLECEIE  120
PSPKPSNEAA AEASRFAKVS LHGSGATQLV ADRHSWCFDH NQTARMLPGV LLQRELNVVI  180
LHQMTKTTLF CIRWKTLRIL MYGPSREQGS SHRANSDVPL LNTPNEKIPR VSSDKQLAQS  240
HRLTNGTGPV SNSKQAPHTG LSPDSFDGNG PHNKKTKKTK AWTKDEDAEL MAGVHKCGEG  300
NWLDILRKYN FDSTRTYGQL SQRWAVISRR QATTKPAKAK PVTGGYDMKA TQKAFFMALD  360
MPMGKPGGLS TLRSGASQQS TQHPAPVFGA AAPELKSATP SSSFSLPVPV PSAAPGPVSA  420
QVQVQPPRAQ QVPSQAAPSK VSNASIKSRN SSKKQTAQAN PTNAPSSIQA AAIAAGGRIA  480
TASIATNLLK AAQSPQAVHI RSRGKGSSKT STSSKASTMA GEPGTQTGGA QHPELPNCSA  540
PTQSPTVLIT QSTEQVNVVP EVAGVNPPEQ SASAHLLEPD RTLSTTPVPG PCDNMEIDDD  600
STFCVVTMED LFPEDVKQPE TVKQPEMVRQ PETVRQPEMV RQTETVSQPE MVRQTETVRQ  660
PEMVKQPETV RQPEMVDPKA EEMIDPKDAD MLEFDRFVAQ GCLTTDYSDK SKGVKIAPGA  720
QGATASQKKK QLPTVGKSIP VFRAPVTMKK TKALPSHGAT LASTVASSGL VGTGNAGVLS  780
KAIYRKPAGP GTTGKQNSGT PARNTAPGTG TPPVRNTAPG TGTPPVRNTA PGTGTPPVRN  840
TAPGTGTPPV RNMAPGTGTP AVRNTAPGTG TAARNSLTGT GTPQARNLLT GTGTPPARNA  900
APVTGATPAR NLLTGMGTPP AIRQHNPAPG RDHQVRCRAT CSESVDSLSP LRVPFNLVWS  960
WLACLWTVAA GMGSAVGRVA PLEDMDGGLR LPPALRTGYY KPRPVTTERF RTIQASKITT  1020
PARKTTPTFH ISHTPKAIIQ RR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370818	0.0	AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186656.1	0.0	mucin-5AC-like isoform X1
TrEMBL	M7ZCA4	0.0	M7ZCA4_TRIUA; Telomeric repeat-binding factor 1
STRING	TRIUR3_28872-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-20	MYB_related family protein