PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28848-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 632aa    MW: 70165.4 Da    PI: 5.4932
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28848-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-093854221954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  TRIUR3_28848-P1 385 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 422
                      664559******************************88 PP

2BELL120.19.6e-39248319172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akLl +l+eVd++Yk+y +q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcLkdai +q+
  TRIUR3_28848-P1 248 EKQELQNKMAKLLAMLDEVDRKYKHYFHQMQIVVSSFDMIAGSGAAKPYTAVALQTISRHFRCLKDAINDQV 319
                      689******************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.2E-54172317IPR006563POX domain
PfamPF075261.1E-49178315IPR006563POX domain
PROSITE profilePS5007112.357363426IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-28365438IPR009057Homeodomain-like
CDDcd000861.74E-12366427No hitNo description
SMARTSM003891.6E-9366430IPR001356Homeobox domain
SuperFamilySSF466892.91E-17367432IPR009057Homeodomain-like
PfamPF059201.0E-17383422IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MYSPDTGNAS YPVPSALGNL LYSNNASSGP YTEFSGIIQP QQNFMELHGH PSEHSSSREP  60
PNMVTSLTEQ SSFAPVKDMR NEMLMHFMDG AQSGGGGGDL IHNDAHSSAQ LDFGLLNNPS  120
SASVPSAPGQ GLSLSLNTHI LAPSYPYWSP KPDLLTTQSY QGDENGMKNM QSEASRAIRN  180
SKYLKAAQEL LDEIVSVWKS IKQNAQKEKA EAGKMDGKDA DEVLKSEGVS SNPQESTANA  240
EAEISAAEKQ ELQNKMAKLL AMLDEVDRKY KHYFHQMQIV VSSFDMIAGS GAAKPYTAVA  300
LQTISRHFRC LKDAINDQVN VIRKKLGEED SSSGREGKLT RLRYIDQQLR QQRAFQQYGM  360
LQQNAWRPQR GLPENSVSIL RAWLFEHFLH PYPKDSEKLM LARQTGLTRS QISNWFINAR  420
VRLWKPMIED MYKEETGEAE LDSNSSSDNL PRSKDKMASC EDKEDLKCSM SQGQAYQTSE  480
FKANMEMAGL TGAPSSFHNE ANSDDGFMNL LLKDQRPGEA DGSLLHGDES ARFMAYHLAE  540
LGGYQNSNVS LTLGLQHTEN SLSAPNAHRP GFTAAGEEDI YNTTAAHPRV SELKKYVKLV  600
LKLDMNTVLI PFENINYADM APYLADVAWV DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16372429158Homeobox protein Meis1
4xrs_B2e-16372429158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652800.0AK365280.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149633.10.0BEL1-like homeodomain protein 7
RefseqXP_020149634.10.0BEL1-like homeodomain protein 7
RefseqXP_020149635.10.0BEL1-like homeodomain protein 7
RefseqXP_020149636.10.0BEL1-like homeodomain protein 7
RefseqXP_020149637.10.0BEL1-like homeodomain protein 7
RefseqXP_020149638.10.0BEL1-like homeodomain protein 7
RefseqXP_020149639.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-123BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLM7YAP60.0M7YAP6_TRIUA; BEL1-like homeodomain protein 6
STRINGTRIUR3_28848-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-120BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]