PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28848-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 632aa MW: 70165.4 Da PI: 5.4932 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.6e-09 | 385 | 422 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + TRIUR3_28848-P1 385 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 422 664559******************************88 PP | |||||||
2 | BELL | 120.1 | 9.6e-39 | 248 | 319 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akLl +l+eVd++Yk+y +q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcLkdai +q+ TRIUR3_28848-P1 248 EKQELQNKMAKLLAMLDEVDRKYKHYFHQMQIVVSSFDMIAGSGAAKPYTAVALQTISRHFRCLKDAINDQV 319 689******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.2E-54 | 172 | 317 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-49 | 178 | 315 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.357 | 363 | 426 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 365 | 438 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.74E-12 | 366 | 427 | No hit | No description |
SMART | SM00389 | 1.6E-9 | 366 | 430 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-17 | 367 | 432 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 383 | 422 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MYSPDTGNAS YPVPSALGNL LYSNNASSGP YTEFSGIIQP QQNFMELHGH PSEHSSSREP 60 PNMVTSLTEQ SSFAPVKDMR NEMLMHFMDG AQSGGGGGDL IHNDAHSSAQ LDFGLLNNPS 120 SASVPSAPGQ GLSLSLNTHI LAPSYPYWSP KPDLLTTQSY QGDENGMKNM QSEASRAIRN 180 SKYLKAAQEL LDEIVSVWKS IKQNAQKEKA EAGKMDGKDA DEVLKSEGVS SNPQESTANA 240 EAEISAAEKQ ELQNKMAKLL AMLDEVDRKY KHYFHQMQIV VSSFDMIAGS GAAKPYTAVA 300 LQTISRHFRC LKDAINDQVN VIRKKLGEED SSSGREGKLT RLRYIDQQLR QQRAFQQYGM 360 LQQNAWRPQR GLPENSVSIL RAWLFEHFLH PYPKDSEKLM LARQTGLTRS QISNWFINAR 420 VRLWKPMIED MYKEETGEAE LDSNSSSDNL PRSKDKMASC EDKEDLKCSM SQGQAYQTSE 480 FKANMEMAGL TGAPSSFHNE ANSDDGFMNL LLKDQRPGEA DGSLLHGDES ARFMAYHLAE 540 LGGYQNSNVS LTLGLQHTEN SLSAPNAHRP GFTAAGEEDI YNTTAAHPRV SELKKYVKLV 600 LKLDMNTVLI PFENINYADM APYLADVAWV DF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 372 | 429 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 372 | 429 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365280 | 0.0 | AK365280.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149633.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149634.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149635.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149636.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149637.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149638.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_020149639.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | O65685 | 1e-123 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | M7YAP6 | 0.0 | M7YAP6_TRIUA; BEL1-like homeodomain protein 6 | ||||
STRING | TRIUR3_28848-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-120 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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