PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28766-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 16693 Da PI: 8.4692 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G+g+W+++++ g+ R++k+c++rw +yl TRIUR3_28766-P1 14 RGLWSPEEDEKLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYL 61 789*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.1e-12 | 67 | 103 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg++++eE++l+++++ lG++ W+ Ia+ ++ gRt+++ TRIUR3_28766-P1 67 RGAFSQEEEDLIIHLHSILGNK-WSQIAAQLP-GRTDNE 103 89********************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 9 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.438 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-28 | 11 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.31E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 65 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.421 | 66 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-5 | 66 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-11 | 67 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-6 | 69 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MSKRPGGTKK RLKRGLWSPE EDEKLMNHIA KYGNGCWSSV PKIAGLERCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIH LHSILGNKWS QIAAQLPGRT DNEPDEGYVE LHSQYELDSD 120 VGQDFAANIW RKWGVPINYK EGLAVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-23 | 12 | 102 | 25 | 114 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 1e-165 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 7e-69 | transcription factor MYB3-like | ||||
Swissprot | Q8LPH6 | 1e-52 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | M7Z170 | 1e-104 | M7Z170_TRIUA; Transcription factor MYB86 | ||||
STRING | TRIUR3_28766-P1 | 1e-105 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 6e-57 | myb domain protein 55 |