PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28710-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39494 Da PI: 4.6165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 95 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdps+ r++lg+f +ae Aa+a++ +++++g TRIUR3_28710-P1 95 KFRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFKSAEAAARAYDVEARRIYG 144 89*******.**********965...4********************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-35 | 95 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 95 | 153 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 95 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-30 | 95 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-9 | 95 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.78E-31 | 95 | 153 | No hit | No description |
PRINTS | PR00367 | 5.2E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MYGGASLMDL EISTVTRKVT EATLRPKKKT PRPGGSGDFE ADYENFEADY GDSDLDLGHS 60 GVDEKDDDEE VIEIKPVAAV KRRSLSQAKR KRKNKFRGIR QRPWGKWAAE IRDPSKGVRV 120 WLGTFKSAEA AARAYDVEAR RIYGNKANVN FPEEPTVPQK RRTRCPAPKA PKLRASWEPT 180 AIPVVNNLAN PNPFVYPSAN FASNQPLALH ENVSFVPTMN SDGPVEASVM NLHSDQGSNS 240 FGYSDLGWNY DTKTPDISST TPISTIADGV ESALVQSNPY NSVVIAEGAE SAALVQSNTY 300 NSTVPPAMEN NGIDIVAWAT LLMDDGVVEP IDSLLNFDVP QDVSGNMDIG SSEDMTMCGE 360 FV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 96 | 152 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 91 | KRRSLSQAKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157944.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 2e-98 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M7ZS74 | 0.0 | M7ZS74_TRIUA; Ethylene-responsive transcription factor 1 | ||||
STRING | TRIUR3_28710-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 4e-26 | related to AP2 12 |