PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28474-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 34430.6 Da PI: 6.5373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ +aeeAa+a++ +++++g TRIUR3_28474-P1 70 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDVEARRIRG 119 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.04E-31 | 70 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 70 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.907 | 70 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 70 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-11 | 71 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAVEAAVAGR GSRRGGSYRK AVKRSQRGGY GQKINRLIFI SLLHSDGLKA TAAGDDDCAS 60 GSAKRKRKNQ FRGIRRRPWG KWAAEIRDPR KGVRVWLGTY NSAEEAARAY DVEARRIRGK 120 KAKVNFPEEA PMAPQQRCAT SVKVPEFNTE QKPVLNTMGH ADVYSCPAVD YTINQQFVQP 180 QNMSFVPTVN AVEAPFMNFS SDQGSNSFSC SDFSWENDIK TPDITSVLAS IPTSTEVNES 240 AFLQNNGINS TVPPVMGDAN VDLADLEPYM KFLMDDGSDE SIDSILSCDV PQDVVGNMGL 300 WTFDDMPLSA GFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 70 | 133 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 77 | KRKRKNQFRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ689812 | 0.0 | KJ689812.1 Triticum turgidum subsp. durum ethylene response factor 1 (ERF1) gene, complete cds. | |||
GenBank | KJ689813 | 0.0 | KJ689813.1 Triticum turgidum subsp. durum ethylene response factor 1 short form P (ERF1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183034.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-108 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A446X5T4 | 0.0 | A0A446X5T4_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZUV6 | 0.0 | M7ZUV6_TRIUA; Ethylene-responsive transcription factor 1 | ||||
STRING | TRIUR3_28474-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 3e-34 | related to AP2 2 |