PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28229-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 609aa    MW: 66799.6 Da    PI: 6.7343
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28229-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.7e-28203256155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  TRIUR3_28229-P1 203 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 256
                      79*******************.********************************8 PP
2Response_reg79.51.2e-26211291109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  TRIUR3_28229-P1  21 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 112
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  TRIUR3_28229-P1 113 GACDYLLKPVRIEELRN 129
                      ***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1741608IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.5E-4118170No hitNo description
SuperFamilySSF521721.71E-3518146IPR011006CheY-like superfamily
SMARTSM004481.5E-3119131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.2320135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.34E-2722134No hitNo description
Gene3DG3DSA:1.10.10.602.0E-30200261IPR009057Homeodomain-like
PROSITE profilePS5129411.055200259IPR017930Myb domain
SuperFamilySSF466891.4E-19201260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25203256IPR006447Myb domain, plants
PfamPF002491.1E-6205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MMMEARKGLM ERDQFPAGMR VLAVDDDPVC LKVLEVLLRR CQYHVTTTNQ AATALRLLRE  60
NKDMFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSVN GETKTVLKGI THGACDYLLK  120
PVRIEELRNV WQHVVRRKFC NREPNNLDFC KEISWDSYHR LGQATCDRSS DQSNRASKKR  180
KEPHCEEEDE GEDNDDASAA SKKPRVVWSV ELHRKFVAAV NQLGIDKAVP KRILELMNVE  240
KLTRENVASH LQKYRLYLRR LSAVASQQAS IAAAFGGRDP FLHMGAFEGL HSYHQPFGPS  300
AAPPSFNPHG LLSGAGATTF GLQDLASPKG IHCAGNNGEV SLQGNKHADL TQGLTASSFG  360
QPRLQQEWIH QETNDLCSVF SGGALANTMR GTFQRITSSS LPPEDLLECT PHIKVGAHPS  420
VGIQNASSGL LERSQQGALP VGDGFSVDKL PLHISFDGAI ATKLDASFVT EEQGMDQKGI  480
FSERMTVGVC PSESLIAASS GRCGASSSGS TRLLPPHDTD RHSKYLQFGV ASNSRHRMDG  540
GMRQDQRLNN GDFSYDGGAI VPEQTDVYDL GISKLQGQGA LNSSSCNFDG LLNSIVKVEN  600
RHVMTILPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-24200262264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLM7ZJQ10.0M7ZJQ1_TRIUA; Two-component response regulator
STRINGTRIUR3_28229-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-109response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]