PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28150-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 750aa    MW: 80173.2 Da    PI: 6.9214
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28150-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.4e-12365421155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++ +++Aa+a++ a++k++g
  TRIUR3_28150-P1 365 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDNEDKAARAYDLAALKYWG 421
                      78*******************88888885446666.6699989*************98 PP
2AP246.58.9e-15464515155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIUR3_28150-P1 464 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 515
                      57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.57E-17365429No hitNo description
PfamPF008471.7E-8365421IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-14365431IPR016177DNA-binding domain
SMARTSM003802.7E-21366435IPR001471AP2/ERF domain
PROSITE profilePS5103217.293366429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-12366430IPR001471AP2/ERF domain
PRINTSPR003674.9E-6367378IPR001471AP2/ERF domain
PfamPF008477.5E-10464515IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17464524IPR016177DNA-binding domain
CDDcd000188.08E-24464525No hitNo description
SMARTSM003806.6E-33465529IPR001471AP2/ERF domain
PROSITE profilePS5103219.072465523IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18465523IPR001471AP2/ERF domain
PRINTSPR003674.9E-6505525IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MASGGNWLGF SLSPHMAMEV PSSSEPDHAQ PASASAMSAS PTNAATCNLL FSQPAQMAAP  60
PPGYYYVGGA YGDGTSTAGV YYSHHPVMPI TSDGSLCIME GLLTVALLSL LLVPVVANAD  120
INLSCCHHVG MMPSSSPKLE DFLGGGNGSG HDAVTYYSHQ QQDQQDQEAS RIYHHHQQQQ  180
QQLAPYNFQH LTEAEAIYQE ATAPMDEAMA AAKNQLVTSY GSCYSNAGMQ PLSLSMSPRS  240
QSSSCHLTEA EAIYQEATAP MDEAMAAAKN QLVTSYGSCY SNAGMQPLSL SMSPRSQSSS  300
CVSAAPQQHQ MAAAAAAASL AASQGGSNGG GEQEQCVGKK RGTGKGGQKQ PVHRKSIDTF  360
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK DGQTRKGRQG GYDNEDKAAR AYDLAALKYW  420
GPSTNTNFPL ENYREEVEEM KSMTRQEFVA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA  480
RIGRVAGNKD LYLGTFTTQE EAAEAYDVAA IKFRGLNAVT NFDITRYDVD KIMESSSLLP  540
GDEARKVKAV EAANHVPAMH NGGGEISHSE EGSSGVWRMV LHGTPQQAAQ CTPEVADLQK  600
GFMGGGDPRS SLHGIAGFDV ESAAHDIDVS GKINYSNSSS LVTSLSNSRE GSPERFSLPS  660
LYAKHPNAVS VASMSPWMAM PAPAAAPALR GPNSSMPVFA AWTPSLYAKH PTAVSVASMS  720
PWMAMPAPAA AHVLRGPNSS MPVFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4585190.0AB458519.1 Triticum aestivum WANT1-2 mRNA for AP2 transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159300.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-136CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLM7ZPY90.0M7ZPY9_TRIUA; AP2-like ethylene-responsive transcription factor ANT
STRINGTRIUR3_28150-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]