PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27911-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37230.3 Da PI: 10.1861 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.4 | 8e-51 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yL+kkv+++++el +vi++vd++k+ePwd+++ ++ + +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk+ TRIUR3_27911-P1 11 VPPGFRFHPTEEELLTYYLTKKVASQRIEL-DVIRDVDLNKLEPWDIQErcRIGTgPQNDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69****************************.9***************953444442456*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++ +g++ktLvfykgrap+g+k+dW+mheyrl TRIUR3_27911-P1 104 IYSAsGSGRIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 141 **9977778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-55 | 7 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.282 | 11 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 12 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-55 | 180 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MSISVNGQLM VPPGFRFHPT EEELLTYYLT KKVASQRIEL DVIRDVDLNK LEPWDIQERC 60 RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSASGS GRIGMRKTLV 120 FYKGRAPHGH KSDWIMHEYR LDDASTPANN PANPAAGNAP YYSGSSSLMR GVAGDQSSVQ 180 EDGWVICRVF KKKNIVVQHQ AGQTGSGGAS ASSKLVGAGA PEDDSSRCDF HRKSRPPIAL 240 LTGTVRSFAV KKKTAVNTPA RGPPPAPCRS LFAPLARRGH TVTDLGRTPD LQPPMPPICT 300 EPLASPEGRR CKGEQERTTG RKAAMCGIRC PIPDGNVPAT GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 4 | 194 | 8 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367801 | 0.0 | AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149596.1 | 1e-144 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 6e-94 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | M7ZS56 | 0.0 | M7ZS56_TRIUA; NAC domain-containing protein 43 | ||||
STRING | TRIUR3_27911-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 4e-82 | NAC family protein |