PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27886-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 305aa    MW: 33195.8 Da    PI: 6.6423
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27886-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-123987155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++kGV   + +grW A+I++      + r++lg+f  +e Aa+a++ a+++++g
  TRIUR3_27886-P1 39 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFADEESAARAYDVAALRFRG 87
                     689***9788.8*********3.....5*************************98 PP
2B395.24.6e-30158250185
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk++ae+h         g++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+v+F+++
  TRIUR3_27886-P1 158 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDTVTFSRS 250
                      89****************************999955667899************************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-163996IPR016177DNA-binding domain
PfamPF008472.0E-73987IPR001471AP2/ERF domain
PROSITE profilePS5103220.3894095IPR001471AP2/ERF domain
CDDcd000183.71E-224095No hitNo description
SMARTSM003809.0E-2740101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-204095IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.5E-38154268IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-28156250No hitNo description
SuperFamilySSF1019362.35E-29156250IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-27158252IPR003340B3 DNA binding domain
PROSITE profilePS5086313.86158269IPR003340B3 DNA binding domain
SMARTSM010194.6E-21158258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASGKPTNPE IDNDMECSSP ESGAEDAVES SSPAPAPSSR FKGVVPQPNG RWGAQIYEKH  60
SRVWLGTFAD EESAARAYDV AALRFRGRDA VTNYQLPLAV EGASSSSTSE LAFLADHSKA  120
EIVDMLRKHT YADELRQGLR RGHGRAQPTP AWAREFLFEK AVTPSDVGKL NRLVVPKQHA  180
EKHFPPTTAA ATGSNGKGLL LNFEDGEGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLV  240
AGDTVTFSRS AYVMNDTEEQ LFIDYKQKNK NDEAADAAKN EAGHAAVKLF GVDIGGGEMA  300
GSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4915527211121DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612890.0AK361289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164924.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS71e-122Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLT1NBI80.0T1NBI8_TRIUA; Uncharacterized protein
STRINGTRIUR3_27886-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-101related to ABI3/VP1 2