PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27883-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25170 Da PI: 10.2668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.4e-11 | 181 | 221 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +GV++ k+ +W A I++ +k+++lg+ gt +eAa++++++ TRIUR3_27883-P1 181 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRYY 221 79**98..47*********4.....5*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.702 | 156 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-5 | 180 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-6 | 180 | 221 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-4 | 183 | 219 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MIGRLPAFTL ADRPSAYLAF IGMSPRSLLG RSAFNPALCL PRLFKPAAHG PKPYPFEPFS 60 HRPTTHPSSP WPGPLLCGGS SSMVSLRRRR LLGLCSGKDS LPVDLPKPVE NEKHGEVEHA 120 NVNPLSVHPL PLTRTSDVLP ESSNGSDSLK EEKNQYYPGK EIKRRKRHRR KQYVDQEPCI 180 MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ DEAARLYDRY YLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250102 | 0.0 | AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence. | |||
GenBank | AK364562 | 0.0 | AK364562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026I07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197934.1 | 6e-97 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | T1NBI5 | 1e-164 | T1NBI5_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_27883-P1 | 1e-165 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 6e-23 | ERF family protein |