PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27858-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 194aa MW: 21407.8 Da PI: 10.7092 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 63.9 | 2.9e-20 | 12 | 44 | 28 | 60 |
zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +Pr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ TRIUR3_27858-P1 12 KPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 44 7******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 15.528 | 1 | 44 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-10 | 11 | 43 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-15 | 12 | 43 | IPR003851 | Zinc finger, Dof-type |
SuperFamily | SSF57756 | 1.07E-7 | 149 | 184 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 1.1E-6 | 162 | 179 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGGAAGIKLF GKPRHFCRAC HRYWTAGGAI RNVPVGSGRR KNRPVLHGAS TVMSVADHHL 60 AGPASPGMPN GLGFHPDHGW SQAVPPTAYL GHGEMEQCWW LVHQYPAQGQ VEIKKEHQVL 120 MVNKTTSFKK KGKGKKGNFK KNSKQVAAPG KKPKSVPKPE TECFYYKGMG HWKRNCPKYL 180 ADKKDGKVNK GDKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | KGKGKKG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX295577 | 1e-118 | JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M7Z4W0 | 1e-141 | M7Z4W0_TRIUA; Dof zinc finger protein DOF3.3 | ||||
STRING | TRIUR3_27858-P1 | 1e-142 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 5e-15 | Dof family protein |