PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27828-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 369aa    MW: 40961 Da    PI: 6.8685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27828-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.14.7e-081559549
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ++    vtf k r g++K A  L   + a+v vi+  ++ k+y +
  TRIUR3_27828-P1 15 DDKEHDVTFFKQRGGLFKSAADLNAITCARVVVILETENKKMYSF 59
                     677789*************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0044162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.876363IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-11676IPR002100Transcription factor, MADS-box
PfamPF003192.6E-101459IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPRRGRRLGI AYVHDDKEHD VTFFKQRGGL FKSAADLNAI TCARVVVILE TENKKMYSFG  60
TPSAGPIVDV FLSSAPPGNR LTNKETSAKI SRLQSEVARL DMEHGMEDKR NQLSIQHVKQ  120
IQEQYPGMVA NLIFSKEQDL NLEDAKKLFN ELSRVHEDTR HRLPKLHHSY KAITGGASMI  180
QNMLPSSGPP PKSLKTIPSS VHSIWDHHLS QHHMPSAPLT SPLEHNVEPL FPRVPQMFHV  240
ASAASAPQFA SQLQGIPNQV QDLHVEDYIS PRNTVHPPQN NASHVSATGH NMVDSPLLVY  300
SSSNDFVVDD PFGHDQWGFA LPDQQLYNGF LGMDVYLGNN GTDVGQSSMY NGGRVDAPPE  360
SSSRKQDVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.11e-133floral homeotic protein APETALA 1-like
TrEMBLT1NBD40.0T1NBD4_TRIUA; Uncharacterized protein
STRINGTRIUR3_27828-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-09AGAMOUS-like 17