PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27452-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 394aa    MW: 43467.8 Da    PI: 4.9184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27452-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18128177255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W++eIrdps+    +r++lg+f +aeeAa+a++  + +++g
  TRIUR3_27452-P1 128 QFRGIRQRP-WGKWAVEIRDPSK---GARVWLGTFNSAEEAARAYDVEAHRIRG 177
                      69*******.**********965...4***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-29128185No hitNo description
SMARTSM003805.1E-32128192IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20128186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-29128186IPR001471AP2/ERF domain
PROSITE profilePS5103222.721128185IPR001471AP2/ERF domain
PRINTSPR003671.2E-10129140IPR001471AP2/ERF domain
PfamPF008474.1E-11129177IPR001471AP2/ERF domain
PRINTSPR003671.2E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCGGASLADV KVPTVTRKVK KTALWPEKKK PRCGGSGDRR FTGLGEHGGV DLDDNKDYEA  60
DFKEFEANSG SDLELGRSTV DEKDDDDEAV EIKPFVAVKR SLSQGIRPGT MTTAGFDGTS  120
AKRKRKNQFR GIRQRPWGKW AVEIRDPSKG ARVWLGTFNS AEEAARAYDV EAHRIRGNKS  180
KVNFPKEPTV PQERRARPTT LKAPKLCVAQ EPSVMPSVNN LANPNASVYP FTDFASNQPL  240
DLPDNVSFVP TMNSTSLVEA FIMNLYSDQG SNSFGCSDLD YYYDTKTPDI PSIAPISTIV  300
EGAESTLVQG NTYNPVVIAE GAKSALAQSN TYNSMVPPVR ENKDVDFEAL TRFLMDDGMD  360
EPIDSLLNFY VPRDVVGNMD LWSFDDMPMC GKIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21128185260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196620.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-117ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLT1NAC40.0T1NAC4_TRIUA; Uncharacterized protein
STRINGTRIUR3_27452-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-32related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]