PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27452-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 43467.8 Da PI: 4.9184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 128 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W++eIrdps+ +r++lg+f +aeeAa+a++ + +++g TRIUR3_27452-P1 128 QFRGIRQRP-WGKWAVEIRDPSK---GARVWLGTFNSAEEAARAYDVEAHRIRG 177 69*******.**********965...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-29 | 128 | 185 | No hit | No description |
SMART | SM00380 | 5.1E-32 | 128 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 128 | 186 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 128 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 128 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 129 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 129 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MCGGASLADV KVPTVTRKVK KTALWPEKKK PRCGGSGDRR FTGLGEHGGV DLDDNKDYEA 60 DFKEFEANSG SDLELGRSTV DEKDDDDEAV EIKPFVAVKR SLSQGIRPGT MTTAGFDGTS 120 AKRKRKNQFR GIRQRPWGKW AVEIRDPSKG ARVWLGTFNS AEEAARAYDV EAHRIRGNKS 180 KVNFPKEPTV PQERRARPTT LKAPKLCVAQ EPSVMPSVNN LANPNASVYP FTDFASNQPL 240 DLPDNVSFVP TMNSTSLVEA FIMNLYSDQG SNSFGCSDLD YYYDTKTPDI PSIAPISTIV 300 EGAESTLVQG NTYNPVVIAE GAKSALAQSN TYNSMVPPVR ENKDVDFEAL TRFLMDDGMD 360 EPIDSLLNFY VPRDVVGNMD LWSFDDMPMC GKIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 128 | 185 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196620.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-117 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | T1NAC4 | 0.0 | T1NAC4_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_27452-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-32 | related to AP2 12 |