PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27393-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 37238.7 Da PI: 9.092 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.4 | 7e-33 | 70 | 210 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+Ptd+el+ e+L+ k++ ++ ++++ +i+ +i++++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + TRIUR3_27393-P1 70 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplIDEFIpAIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggE 161 799************.99****999985665543333334766657**********.555555677******************7444565557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l TRIUR3_27393-P1 162 TRWHKTGKTRPVFT-DGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 210 78************.99************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-37 | 62 | 229 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 70 | 229 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-15 | 71 | 210 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MTWCNSFNDV RAVENNLASA AAVAAAAAKK QHHHQQQASS HVSLVRTCPA CGHHAQYEQA 60 AATIQDLPGL PAGVKFDPTD QELLEHLEGK ARPDTRKLHP LIDEFIPAIE GENGICYTHP 120 ERLPGVGKDG LIRHFFHRPS KAYTTGTRKR RKVHTDEQGG ETRWHKTGKT RPVFTDGKLK 180 GYKKILVLYT NYGKQRKPEK TNWVMHQYHL GSDEEEKDGE LVVSKVFYQT QPRQCGGSTA 240 APLRGGALTH RDAAITAGNI IKGGGAGATS DHHRHHHEDG HNNNMLKEAA GMVDFYSPTA 300 AALIGYSSQA APPNNRAAAA AAAASAHLMP NFEVHTGGTG FGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359631 | 0.0 | AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16. | |||
GenBank | AK370035 | 0.0 | AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160558.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-124 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M8AIJ4 | 0.0 | M8AIJ4_TRIUA; NAC domain-containing protein 8 | ||||
STRING | TRIUR3_27393-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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