PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27054-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 349aa    MW: 38327.4 Da    PI: 7.3605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27054-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017317339123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++C+ +F+++  +  H+++H
  TRIUR3_27054-P1 317 YRCSICNLTFNSSQAFGGHMSSH 339
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.68E-5314343No hitNo description
PfamPF139121.1E-7317341IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972317344IPR007087Zinc finger, C2H2
SMARTSM003550.0064317339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVEGMMVEGM MVEIMVVEGI DKASVCQKLS DRLHRKIGPY DNANVTEIAP DVRYKTIRWA  60
DQVGLAGDMD PNGSYPNKVR SSESEANISP LHDAPRGRAI MPMLSDFVPL NSTPSDSTWI  120
WNTPPTIDAP HVVTMPSIKD CSIMPYQTSA SLSSLPPQLP DAKFTPTTRV NTLTSQPNHR  180
EIFENPPEIF SHQDFLSNPI RNYFSSSDQS RIFSMESPSI TSLLQGDPIA VVNAHLNTIG  240
AIDDGPIFEI PTRSVYKGPK NIPHGTLTRD ATYVVPTPLA PFATSSHGPR EYKTPMGVPN  300
GITNSGIVHN TMSSRKYRCS ICNLTFNSSQ AFGGHMSSHS KARKNKLQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231926.21e-75uncharacterized protein LOC104582794
TrEMBLM7ZX940.0M7ZX94_TRIUA; Uncharacterized protein
STRINGTRIUR3_27054-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612