PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27020-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 339aa    MW: 37590.2 Da    PI: 6.3414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27020-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-1660107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg W++eEde+l++ + ++G g+W++++r  g+ R++k+c++rw +yl
  TRIUR3_27020-P1  60 RGLWSPEEDEKLYNHIIRYGVGCWSSVPRLAGLERCGKSCRLRWINYL 107
                      788*******************************************97 PP

2Myb_DNA-binding50.16.5e-16113156146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v ++k lG++ W+ Ia+ ++ gRt++++k++w++
  TRIUR3_27020-P1 113 RGSFSQQEEDLIVSLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 156
                      899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2353110IPR009057Homeodomain-like
PROSITE profilePS5129418.21855107IPR017930Myb domain
SuperFamilySSF466891.1E-2857154IPR009057Homeodomain-like
SMARTSM007178.7E-1359109IPR001005SANT/Myb domain
PfamPF002495.9E-1460107IPR001005SANT/Myb domain
CDDcd001671.74E-1163107No hitNo description
PROSITE profilePS5129424.908108162IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-25111162IPR009057Homeodomain-like
SMARTSM007176.5E-15112160IPR001005SANT/Myb domain
PfamPF002493.6E-14113156IPR001005SANT/Myb domain
CDDcd001675.81E-11115155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSLLYRLCPA LPCLTIIVAI TGRYRARSLV TPPGSTHMRA MGREAATAVA CSSNKPKLRR  60
GLWSPEEDEK LYNHIIRYGV GCWSSVPRLA GLERCGKSCR LRWINYLRPD LKRGSFSQQE  120
EDLIVSLHKI LGNRWSQIAS QLPGRTDNEI KNFWNSCIKK KLRQQSIDPT THEPLNDAAA  180
VAEPHDECKQ QVPAAEDGGS VGSDDLLAPH SPVDCSFDPM SVTNVPTMHM QGSYSLCDYA  240
STYSAYTGGG DSSSNSNGTG TGTSTWTCGN VEPLPHMDMF RDAEPYPFDP TKFSPWHQQH  300
APDDDRGSAV FPIRSLSRDL PESCFELARG ALEDEFDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31561623108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925931e-153FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192081.10.0myb-related protein Hv33-like
SwissprotP200271e-76MYB3_HORVU; Myb-related protein Hv33
TrEMBLM7ZP310.0M7ZP31_TRIUA; Myb-related protein Hv33
STRINGTRIUR3_27020-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-71myb domain protein 86