PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27020-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 37590.2 Da PI: 6.3414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 60 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W++++r g+ R++k+c++rw +yl TRIUR3_27020-P1 60 RGLWSPEEDEKLYNHIIRYGVGCWSSVPRLAGLERCGKSCRLRWINYL 107 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.5e-16 | 113 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v ++k lG++ W+ Ia+ ++ gRt++++k++w++ TRIUR3_27020-P1 113 RGSFSQQEEDLIVSLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 156 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 53 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.218 | 55 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-28 | 57 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-13 | 59 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 60 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-11 | 63 | 107 | No hit | No description |
PROSITE profile | PS51294 | 24.908 | 108 | 162 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 111 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 113 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-11 | 115 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MSLLYRLCPA LPCLTIIVAI TGRYRARSLV TPPGSTHMRA MGREAATAVA CSSNKPKLRR 60 GLWSPEEDEK LYNHIIRYGV GCWSSVPRLA GLERCGKSCR LRWINYLRPD LKRGSFSQQE 120 EDLIVSLHKI LGNRWSQIAS QLPGRTDNEI KNFWNSCIKK KLRQQSIDPT THEPLNDAAA 180 VAEPHDECKQ QVPAAEDGGS VGSDDLLAPH SPVDCSFDPM SVTNVPTMHM QGSYSLCDYA 240 STYSAYTGGG DSSSNSNGTG TGTSTWTCGN VEPLPHMDMF RDAEPYPFDP TKFSPWHQQH 300 APDDDRGSAV FPIRSLSRDL PESCFELARG ALEDEFDFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-31 | 56 | 162 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092593 | 1e-153 | FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192081.1 | 0.0 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-76 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | M7ZP31 | 0.0 | M7ZP31_TRIUA; Myb-related protein Hv33 | ||||
STRING | TRIUR3_27020-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-71 | myb domain protein 86 |