PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27018-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 126aa MW: 14674 Da PI: 9.9213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ R++k+c++rw +yl TRIUR3_27018-P1 14 KGAWTKEEDQRLIAHIKDHGEGCWRSLPKAAXXXRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++ TRIUR3_27018-P1 67 RGNFSDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.182 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.19E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.086 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK DHGEGCWRSL PKAAXXXRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIK LHEFLGNKWS LIAGRLPGRT DNEIKNYWNT HVKRKLLARG 120 VDPQTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-31 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF226140 | 0.0 | KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201126.1 | 3e-84 | myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-80 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q38851 | 2e-80 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A126CZG4 | 7e-86 | A0A126CZG4_WHEAT; R2R3-Myb transcription factor | ||||
STRING | Traes_5AS_62CC650D3.1 | 7e-87 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 7e-83 | myb domain protein 6 |
Publications ? help Back to Top | |||
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