PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_26920-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 913aa MW: 99166.3 Da PI: 6.0362

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_26920-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.4	5.7e-28	537	588	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ TRIUR3_26920-P1 537 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 588 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.54	522	608	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	540	588	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-23	806	894	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-22	808	890	No hit	No description
SMART	SM00666	7.3E-18	811	893	IPR000270	PB1 domain
PROSITE profile	PS51745	22.763	811	893	IPR000270	PB1 domain
Pfam	PF00564	2.1E-15	812	892	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH 60 QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG 120 SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG ILAQVWMPVE QEGHVVLSTC 180 EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR 240 MEYALHHEVR GSLAMPIYDP SKGSCCAAVN LETAKDCIDQ KVYSANQKAA FTEILDVLRA 300 ICHAHMLPLA LTWVPSSNGS DGGYVGHDSV LDSQSGKAIL RIHESACYVN DAKMQGFFHA 360 CTETHLEKGQ GIAGRALKSN LPFFSPNIRE YGIKDYPLAH HARKFGLHAA VAIRLRSTYT 420 GDDDYILEFF LPINCTGSEE QQMLLNNLSS TMQRICKSLR TVSEAEVDKV DACTAVMYKA 480 TSGSCLPTGQ SWSSSHGDQP ATEEAFQDLS LIDKQGDMSE QAQSSSMRLA EKKRSTAEKN 540 IGMDVLRKYF SGSLKDAAKS LGVCPTTLKR ICRTHGISRW PSRKINKVNR SLKKIQTVIN 600 SVHGVDSSLQ YDPATGSLVP AVSLPEKTSF PSCDAVSSPS VGKTVDEKSG PKSEQGYSSP 660 EGWERDSCQL QRSDAQKGEG DEFHMQTTNY SGSGDHGSYG PNITHHISSE GTQGPLYPTG 720 AVSALHDKET GCIEPLPCVL PSIKTTRDQI VGRNSPPMQQ ADIDMFDDRE GREHTHPSTS 780 GMTDSSSGSA SSHPTFKKNP ARPLKDKSSP ALTVKATYNG DTVRFKFLPS MGWYHLLEEI 840 AKRFKLLTGV FQLKYKDDED EWVIMANDSD LQECVDVMDS MGTRNVKLQV RDLPCLISSS 900 GSSSCLQLEG HNS

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH  60
QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG  120
SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG ILAQVWMPVE QEGHVVLSTC  180
EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MEYALHHEVR GSLAMPIYDP SKGSCCAAVN LETAKDCIDQ KVYSANQKAA FTEILDVLRA  300
ICHAHMLPLA LTWVPSSNGS DGGYVGHDSV LDSQSGKAIL RIHESACYVN DAKMQGFFHA  360
CTETHLEKGQ GIAGRALKSN LPFFSPNIRE YGIKDYPLAH HARKFGLHAA VAIRLRSTYT  420
GDDDYILEFF LPINCTGSEE QQMLLNNLSS TMQRICKSLR TVSEAEVDKV DACTAVMYKA  480
TSGSCLPTGQ SWSSSHGDQP ATEEAFQDLS LIDKQGDMSE QAQSSSMRLA EKKRSTAEKN  540
IGMDVLRKYF SGSLKDAAKS LGVCPTTLKR ICRTHGISRW PSRKINKVNR SLKKIQTVIN  600
SVHGVDSSLQ YDPATGSLVP AVSLPEKTSF PSCDAVSSPS VGKTVDEKSG PKSEQGYSSP  660
EGWERDSCQL QRSDAQKGEG DEFHMQTTNY SGSGDHGSYG PNITHHISSE GTQGPLYPTG  720
AVSALHDKET GCIEPLPCVL PSIKTTRDQI VGRNSPPMQQ ADIDMFDDRE GREHTHPSTS  780
GMTDSSSGSA SSHPTFKKNP ARPLKDKSSP ALTVKATYNG DTVRFKFLPS MGWYHLLEEI  840
AKRFKLLTGV FQLKYKDDED EWVIMANDSD LQECVDVMDS MGTRNVKLQV RDLPCLISSS  900
GSSSCLQLEG HNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150529.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	M7YLA9	0.0	M7YLA9_TRIUA; Protein NLP2
STRING	TRIUR3_26920-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-166	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]