PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26890-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 627aa    MW: 69755.1 Da    PI: 7.4756
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26890-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18277367199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +  s+v +  +l +p +f++eh   ++ ++t++lede+g +++ ++  rk++    l++GW++F+  ++Lk+gD vvF+l+++++f  +v
  TRIUR3_26890-P1 277 FVKLMQISHVVRVFWLGVPVSFCREHL--PNHDVTIVLEDEDGLRFDTNYLARKQG----LSGGWSRFATRHHLKVGDAVVFQLVEQTRF--KV 362
                      88999999******************6..34789****************555555....9**********************9986777..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  TRIUR3_26890-P1 363 YILRE 367
                      88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-21271368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-23273367IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-25275366No hitNo description
PfamPF023626.5E-17277367IPR003340B3 DNA binding domain
SMARTSM010197.8E-20277368IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253277368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MKTYDYINRV DITLPRTVYE GIYQCAYNPF FLLLWLTLTL TPPIGAPESK RGTPAGVPHS  60
AKSKTGQKMV HRRRPLLDEG SSSRNEDGGG DDFEPTAMGG TPAGDSPHSA RTKMGQKMSL  120
AHRRLSLLDD GSRISRHIAA AAAAADDDGG GSEQMGEEFT VDVAQKNTAV DDSDDPDGSG  180
DDFVPLIMMR TKNVKSEPGK HPGFRYKHKA QRTINKTYKR KKTGRSAGPV YAKRKIEKKP  240
RLVGSNNISK ISDDDGQKKY ARALEVEKKL PAEGPSFVKL MQISHVVRVF WLGVPVSFCR  300
EHLPNHDVTI VLEDEDGLRF DTNYLARKQG LSGGWSRFAT RHHLKVGDAV VFQLVEQTRF  360
KVYILRESKF TTTDGALSLL SLDTSMENNM PEKGGEDTSD EDVKSKEDPE VTKVITNKAS  420
DDDSNDPFSE AAANGGIRSP DPDPDFDAVK TFRAFKMVID SSVIDRKLVP DRLLWTYYKL  480
CGDRKAFLHR RLPKHINLTL AAGVIVETAS IAEGIRSYPS SCSSCEDLAA WKKTLESFEL  540
LGMDVGFIRK RLDELLFLLD ARSSDDHLPE GYEEVKLERA RAAEKVKALE SKMASLKDAL  600
KDMDMEMEEI AEKRRGHAML QLAAAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180042.10.0B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLT1N8U00.0T1N8U0_TRIUA; Uncharacterized protein
STRINGTRIUR3_26890-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-32B3 family protein