PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_26867-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 220aa MW: 24481.7 Da PI: 7.5378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_26867-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.7	3.2e-38	33	126	1	95
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+ TRIUR3_26867-P1 33 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILA 125 79**************************.89***********988899************************************98 PP NAM 95 k 95 + TRIUR3_26867-P1 126 S 126 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-45	30	144	IPR003441	NAC domain
PROSITE profile	PS51005	37.907	33	197	IPR003441	NAC domain
Pfam	PF02365	1.1E-17	34	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGSSDSSSGS AQKAARHQHE PPPPRQRGSA PELPPGFRFH PTDEELVVHY LKKKAAKVPL 60 PVTIIAEVDL YKFDPWELPE KATFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD 120 KPILASGCGR EKLDDWVLCR IYKKINKAAA GDQQRSTECE DSVEDAVTAY PLYATAGMAG 180 AGKLHLDSYH MYKLSTDASL ITALIFQDVC REYIPTPSVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	33	148	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	33	148	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	33	148	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	33	148	17	169	NO APICAL MERISTEM PROTEIN
4dul_A	2e-51	33	148	17	169	NAC domain-containing protein 19
4dul_B	2e-51	33	148	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM820886	0.0	KM820886.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-A1 (NAM-A1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187501.1	1e-100	NAC transcription factor NAM-A1
Swissprot	A0SPJ3	1e-102	NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBL	M7YLQ2	1e-163	M7YLQ2_TRIUA; NAC domain-containing protein 18
STRING	TRIUR3_26867-P1	1e-164	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-62	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]