PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26858-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 579aa    MW: 63555.9 Da    PI: 6.7635
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26858-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.41.6e-28211264155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  TRIUR3_26858-P1 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 264
                      79*******************.********************************8 PP
2Response_reg58.63.4e-20231401109
                      EEEESSSHHHHHHHHHHHHHTTC.......EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegy.......eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                      vl vdD+p+ +++l+++l++ +y        + +++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+    e + + i v++ +ge + 
  TRIUR3_26858-P1  23 VLAVDDDPVCLKVLEVLLRRCQYhgqsllaLHLTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGLEMDLPVITVLSVNGETKS 116
                      799****************55543323333477899999999999998889********************9886655445555778******* PP

                      HHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                      +l+ +  Ga d+l Kp+ +eel++
  TRIUR3_26858-P1 117 VLKGITHGACDYLLKPVRIEELRN 140
                      **********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.8E-1621570IPR017053Response regulator B-type, plant
SuperFamilySSF521721.99E-2720155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-3420180No hitNo description
SMARTSM004489.1E-2321142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.98922146IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-1723140IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-2124145No hitNo description
PROSITE profilePS5129411.055208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-30208269IPR009057Homeodomain-like
SuperFamilySSF466891.31E-19209268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25211264IPR006447Myb domain, plants
PfamPF002491.0E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MMMEARKGLM ERERDQFPVG MRVLAVDDDP VCLKVLEVLL RRCQYHGQSL LALHLTTTNQ  60
AATALRLLRE NKDMFDLVIS DVHMPDMDGF KLLELVGLEM DLPVITVLSV NGETKSVLKG  120
ITHGACDYLL KPVRIEELRN VWQHVVRRKF CNREPNNLDF CKDSYHRLGQ AICDSHRSSD  180
QSNRASRKRK ELHSEEEDEG EDNDDAAASK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  240
ILELMNVEKL TRENVASHLQ KYRLYLRRLS AVASQQASIA AAFGGRDPFL HMGAFEGLHS  300
YHQPFAPSSG LPSFNPHGLL SGAGAAAFGL QDFVPSKAIQ CDSSNGAISH CAGDTIKFNI  360
VSSQDNQQAD LTQGLTASSS LGQRWIHQET NDLCSVFSRG ALASTMSSTF QRITSSSLPP  420
EDLLECTPHI KVGAHPSIGI QTASSGLLER SQQGALPIGD GFSIDKLPLH VSFDGAVATK  480
PDASFAAEEQ DMDQKGIFSE RMTVGVCPSE SLIAANNARC GASSSGSTLL LPHDTERHSK  540
YLQFGVASNS RHRMDGMRQD QRLNSGGFSY DGGAIVPEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24208270264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLM7ZTX20.0M7ZTX2_TRIUA; Two-component response regulator
STRINGTRIUR3_26858-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-101response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]