PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26633-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 311aa    MW: 33780.9 Da    PI: 6.2224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26633-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-151564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
  TRIUR3_26633-P1 15 KGPWTEEEDKTLVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding30.58.7e-1070109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+ l++ +++ lG++ W+t    +  gRt++++k++w+++
  TRIUR3_26633-P1  70 RGNFSDEEERLIITLHAGLGNK-WAT----I--GRTDNEIKNYWNTH 109
                      89********************.***....4..6***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9161068IPR017930Myb domain
SuperFamilySSF466891.05E-2212106IPR009057Homeodomain-like
SMARTSM007179.5E-101466IPR001005SANT/Myb domain
PfamPF002494.4E-131564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-211671IPR009057Homeodomain-like
CDDcd001678.51E-81764No hitNo description
SMARTSM007171.8E-769112IPR001005SANT/Myb domain
PROSITE profilePS5129415.3369114IPR017930Myb domain
PfamPF002491.0E-770109IPR001005SANT/Myb domain
CDDcd001672.13E-772110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1872114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRSPCCSHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDEEERL IITLHAGLGN KWATIGRTDN EIKNYWNTHI RKKLLRMGVD  120
PVTHQQLPPD QSHHHLNATS IAHHPGALLW AAAAASLGSL DTGALMQAQL LQQLLQAIGS  180
NNGTSGLIAN LAAANAMLNS SGSMIPNLLL DQMNCLQPGY LCNTSNFAEQ HVVQQQLTND  240
ASPGTSSFAA AEQADQLCNT TASFASHDVA SAGDWSPAQE FAGLLEPMME VPDLCSLESD  300
SFWKDILDDS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251511427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-101AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169252.10.0transcription factor MYB34-like
TrEMBLT1N8430.0T1N843_TRIUA; Uncharacterized protein
STRINGTRIUR3_26633-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-66myb domain protein 9