PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26381-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 552aa    MW: 61396 Da    PI: 4.532
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26381-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.5e-1291835522374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a+++ +  +aqa+++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++f++
  TRIUR3_26381-P1 183 KQLLFDCATALAEYNVDEAQAIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGTGIYKALTCKDPP---TLYQLSAMQILFEICPCYRFGF 273
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea +geer+HiiDfdi+qG Q+++L+q + + ++++ +lRiTgv+++e++      l+ +g+rL+k+Ae +g++fef++ v  ++ 
  TRIUR3_26381-P1 274 MAANYAILEACKGEERMHIIDFDINQGSQYITLMQFMKDDANKTRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGADIG 366
                      ******************************************************9988778889***********************.7999** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e  +yysalfdsl+a+lpres +
  TRIUR3_26381-P1 367 DVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYSALFDSLDATLPRESPD 460
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+s+++   +++llr + ++ y+ ee++g l +gW +++L+++SaW+
  TRIUR3_26381-P1 461 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGGIRSLLRSYCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 552
                      ****************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.022156533IPR005202Transcription factor GRAS
PfamPF035141.2E-126183552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSFVGRVDPS TTYADNIYVH KFGAPNSNFA ARRFGSDTQL FRYGPEPFNS EDYGHMGFPE  60
APSAAFQSSF YNQQASLTPC SDAAKDSPVC SNISQQNSQS ISDNQSSGLE VEFDDEIRLK  120
LQELEHALLD DGDDILFEVS QAGCISDEWA DPMKDVLLAN SPKESESSIS CAGSNSGEAR  180
TPKQLLFDCA TALAEYNVDE AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG  240
IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG  300
SQYITLMQFM KDDANKTRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA  360
VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRMV KGLQPKLVTL  420
VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE  480
GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGGIRSLL RSYCDRYKFE EDHGGLHFGW  540
GEKTLIVASA WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6018955125377Protein SCARECROW
5b3h_D2e-6018955125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496460.0AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172158.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLM7ZG710.0M7ZG71_TRIUA; Uncharacterized protein
STRINGTRIUR3_26381-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]