PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26361-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 288aa    MW: 32407.1 Da    PI: 10.161
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26361-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-092232601954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   n+yps  ++  LA+++gL+ +qV++WF N R +
  TRIUR3_26361-P1 223 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 260
                      665569******************************98 PP

2BELL81.89.1e-2785153472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      el++ k +L  +leeVd+rY++y+eq++ +++ Feavag  +a  Yt++A ++iSrhFr+L+d i+ q+
  TRIUR3_26361-P1  85 ELKRLKDRLYVMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAASGYTAVAARTISRHFRSLRDGIVAQL 153
                      7788899***********************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-3614151IPR006563POX domain
PfamPF075264.6E-3820149IPR006563POX domain
PROSITE profilePS5007112.341201264IPR001356Homeobox domain
CDDcd000861.37E-11204265No hitNo description
SMARTSM003895.9E-9204268IPR001356Homeobox domain
SuperFamilySSF466894.71E-18205272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27207268IPR009057Homeodomain-like
PfamPF059202.7E-18221260IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPHEHDAATY AHGHGAARPL RSSRFLLPAQ QLLQGYCSLP VDITPKRAKP AQTQQQEDGA  60
GGEASSSSTS GWTPSPQIQA MEALELKRLK DRLYVMLEEV DRRYRRYCEQ MRGLAGGFEA  120
VAGERAASGY TAVAARTISR HFRSLRDGIV AQLQAVRKAL GEKDVSPPGM TRGDTPRLKV  180
LDQCIRQQKA MHQNGGMMMD SHPWRPQRGL PERAVTILRA WLFEHFLNPY PSDVDKHILA  240
RQTGLSRSQV SNWFINARVR LWKPMVEEIT IVSNSNSEMC DFMLKLKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15210268563Homeobox protein Meis2
3k2a_B1e-15210268563Homeobox protein Meis2
4xrm_A2e-15210268563Homeobox protein Meis2
4xrm_B2e-15210268563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678000.0AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16.
GenBankAK3721850.0AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13.
GenBankAK3730890.0AK373089.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3020M01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184600.10.0homeobox protein BEL1 homolog
RefseqXP_020184605.10.0homeobox protein BEL1 homolog
RefseqXP_020184610.10.0homeobox protein BEL1 homolog
RefseqXP_020184619.10.0homeobox protein BEL1 homolog
SwissprotQ9SW809e-82BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM7ZZR20.0M7ZZR2_TRIUA; BEL1-like homeodomain protein 2
STRINGTRIUR3_26361-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-82BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]