PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26358-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 379aa    MW: 40830.1 Da    PI: 7.4358
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26358-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
  TRIUR3_26358-P1 13 RGLWSPEEDEKLLRYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding49.97.2e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  TRIUR3_26358-P1  66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26463IPR009057Homeodomain-like
PROSITE profilePS5129416.905860IPR017930Myb domain
SuperFamilySSF466895.99E-2810107IPR009057Homeodomain-like
SMARTSM007175.5E-131262IPR001005SANT/Myb domain
PfamPF002496.9E-151360IPR001005SANT/Myb domain
CDDcd001672.25E-111660No hitNo description
PROSITE profilePS5129425.33861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2464116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
CDDcd001671.75E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKNLLHAHGA TGSSSNPSNN PAAGAQFHSP NGNRNGCATP LFTISSPTKA  180
IYDAATVAPG LYDVHNPGML MGQHERGHQA ALAMQQGYPY VHNNGGGLLM SFRDQNAAGV  240
HASMDFMNGS SNSSSSMEYA AGMPNGNVFN PGVAAFMDET AAMWATVVEP GMGPGIEMAH  300
EHRQQHGLGL EEVVRLGPPP PPLINGGSSG GKGLDMMDVS SEVYGSAGTT TAFDLELMES  360
CGLFCGAAGN GMEQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040061e-52AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042591e-52AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149631e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-52CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166429.10.0transcription factor MYB26-like
TrEMBLM7ZVF80.0M7ZVF8_TRIUA; Transcription factor MYB86
STRINGTRIUR3_26358-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-83myb domain protein 67