PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_26160-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 300aa MW: 32728.8 Da PI: 4.8429 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71 | 1.4e-22 | 211 | 251 | 1 | 41 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + TRIUR3_26160-P1 211 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 251 69***********************************9765 PP | |||||||
2 | QLQ | 53.9 | 5.5e-19 | 145 | 180 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k TRIUR3_26160-P1 145 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 180 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 144 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.018 | 145 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.3E-12 | 145 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.126 | 211 | 255 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-18 | 212 | 249 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAAGGGGQNG CHCDCAVGQE PGQELEGEVE ESADREGNGD DAGKEDSGCK DLVLVEDPVL 60 VEDPEEGFPY KSDVGFFKHG KSDLFIVMLA FLNTDDAQNI RFWVYHCFAV IVVFMYKAEL 120 SVATAALQEE MRALFASVPE GAGASFTAMQ LQELEQQSRV YQYMAARVPV PTHLVFPIWK 180 SVTGASSEGA QNYPTLMGLA TLCLDFGKSP EPEPGRCRRT DGKKWRCWRK TIPNEKYCER 240 HMHRGRKRPV QVIVEDDEPD SASGSKSSSG KVTEGGKKTD DKSSSSKKLA VAAPAAVEFT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249458 | 0.0 | AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153628.1 | 1e-140 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-117 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | M8A539 | 0.0 | M8A539_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_26160-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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