PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25907-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 718aa    MW: 77535.7 Da    PI: 5.875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25907-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-173788657
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     ++t+ q++eL++lFe++++p++++r+ L k+++L+ +qVk+WFqNrR++ k+
  TRIUR3_25907-P1 37 RHTPRQIHELQALFEQCPHPDEKQRAALGKRVRLQPSQVKFWFQNRRTQLKR 88
                     689*********************************************9997 PP
2START164.19.8e-522304602203
                      HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S.... CS
            START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla.... 77 
                      la +a++elvk+a+ +ep+W   +        e +n +++l++f+++ +     + +ea+r+sg+v  +   +lve+lld + +W++ +     
  TRIUR3_25907-P1 230 LATSAMDELVKMAQMDEPLWIPNVplpgslakETLNHEVYLRTFSPAIGvkppgFVSEASRESGIVSSDGSvELVETLLDER-RWSRFFSciia 322
                      7889*****************999999*******************999****************98775448*********.*******99** PP

                      EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS
            START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159
                      + +t+e is+g      gal lm+a+lq+lsplvp R+++f+R++++lg+g w++vdvS d+  + +      +   +++++lpSg+++++++n
  TRIUR3_25907-P1 323 ESSTIEEISTGaagsrdGALLLMQAKLQVLSPLVPiREVTFLRFCKKLGEGFWAVVDVSMDELVMEQGlavasTTANMKCRRLPSGCVVQDTPN 416
                      *************************************************************99988777777788899**************** PP

                      CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
            START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                      g +kvtwveh+ ++++++h+l+r+l++sgla ga +w+atlqrq
  TRIUR3_25907-P1 417 GFCKVTWVEHTVYDESSVHQLYRPLLRSGLALGAGRWLATLQRQ 460
                      ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-182389IPR009057Homeodomain-like
SuperFamilySSF466893.51E-172589IPR009057Homeodomain-like
SMARTSM003891.6E-162893IPR001356Homeobox domain
PROSITE profilePS5007116.392989IPR001356Homeobox domain
CDDcd000864.70E-172990No hitNo description
PfamPF000462.8E-153788IPR001356Homeobox domain
PROSITE profilePS5084841.192220466IPR002913START domain
SuperFamilySSF559612.2E-25223461No hitNo description
CDDcd088751.93E-101224460No hitNo description
SMARTSM002341.4E-36229463IPR002913START domain
PfamPF018521.4E-44230460IPR002913START domain
SuperFamilySSF559617.42E-14482680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
TDPLHAVSGG DAGGGEDGEA APELDHRGKR KRPANARHTP RQIHELQALF EQCPHPDEKQ  60
RAALGKRVRL QPSQVKFWFQ NRRTQLKRES LLHENQQLMA ENGKLRAENL SLRVAMAHPV  120
CGGCGGPVPA MLDESPSLEE EDLRVQNATL KNELSRLCAL ASVFLGRSIS YVAAPPTPGS  180
PAERIGSVPA TTVANSTVTE FTGSPSSQTA GMAITAMAKA GIDRSVFLEL ATSAMDELVK  240
MAQMDEPLWI PNVPLPGSLA KETLNHEVYL RTFSPAIGVK PPGFVSEASR ESGIVSSDGS  300
VELVETLLDE RRWSRFFSCI IAESSTIEEI STGAAGSRDG ALLLMQAKLQ VLSPLVPIRE  360
VTFLRFCKKL GEGFWAVVDV SMDELVMEQG LAVASTTANM KCRRLPSGCV VQDTPNGFCK  420
VTWVEHTVYD ESSVHQLYRP LLRSGLALGA GRWLATLQRQ YDCLDVLMPK QDSSDAMLEG  480
SRSLLRLAER MMDNFCAGVS ASSAEWSKLE DVTGSIGEDV RIMACRSVDE PGVPAGVVLC  540
AATSVWMLVT PKRLFNFLCN ERTRAEWDIL SKGGPMQEVT KIYKGQQNGN AVSLLKATAP  600
NTQQDSSILI LQETCTDASS SMVVYTPVDI PAMRRVMGGE GDPASIMLLP SGFAILPGGP  660
SISGDDGHKT CGSLLTVAFQ ILGNRQPTGK LTVESVQTVD SLISCTINRI KTALRCDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187432.10.0homeobox-leucine zipper protein ROC4-like
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLT1N6520.0T1N652_TRIUA; Uncharacterized protein
STRINGTRIUR3_25907-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]