PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_25771-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 31005.4 Da PI: 4.7769 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2.1e-12 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ed l + v+++ + +W t +++ g++R++k+c++rw++yl TRIUR3_25771-P1 14 RGPWSRDEDAVLRNFVQRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.4e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd l++ + G++ W+ Ia++++ gRt++++k++w++ TRIUR3_25771-P1 69 GSFTEEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111 79*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.604 | 9 | 62 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.52E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-7 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-10 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-5 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.248 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.38E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRSPCCDKA SVKRGPWSRD EDAVLRNFVQ RFANAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLRPALRHGS FTEEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKRYYSL 120 TAAPSTPPTG GDAHAAADSP HGADPSPHGA DQSSLPPPPP SLVNLDAALA TADDGGELTR 180 ESEQLYAELM GLIEPQSTTR ESTGEVMSSP SSFGTSPTAS SFAAGSSATW PVDVHDTILW 240 PESSGNGMVE FDDPCVAHIF GPPSTPDSFL DLLASSYDEV IATQELLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-25 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-121 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157086.1 | 0.0 | transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 9e-62 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | T1N5S1 | 0.0 | T1N5S1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_25771-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 8e-63 | MYB family protein |
Publications ? help Back to Top | |||
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