PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_25713-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 607aa MW: 67383.3 Da PI: 6.7914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.8 | 1.8e-48 | 113 | 262 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkaeekewyfFskrdkkyat 70 lppGf FhP+d elv +yLkkk+ g+k+e ++i+evdiyk+ePwdLp +v +++++w+fF+ rd+ky++ TRIUR3_25713-P1 113 LPPGFGFHPKDTELVAHYLKKKILGQKIEY-DIIPEVDIYKHEPWDLPDficrvlqilivpnplmilhvtakcNVPTQDNKWHFFAARDRKYPN 205 79****************************.99***************5599*************999888776666999************** PP NAM 71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g r+nrat +gyWk+tgkd+++++ +++++g+kktLvf++gr p+g++t+W+mhey + TRIUR3_25713-P1 206 GARSNRATVAGYWKSTGKDRAIKV-DKRTIGTKKTLVFHEGRPPTGKRTEWIMHEYYI 262 ************************.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-53 | 104 | 284 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.915 | 113 | 285 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-24 | 114 | 261 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MDVSSRILVV DISIFATNNF KVYGKFLQGR RDGDSSLKMK YRAPLLAPVP VMRLASSVGA 60 WRLDPSDLHS SSTAVVVLVR WFYGALTRRF PDCLLQQRLP GSYTMETLRD MALPPGFGFH 120 PKDTELVAHY LKKKILGQKI EYDIIPEVDI YKHEPWDLPD FICRVLQILI VPNPLMILHV 180 TAKCNVPTQD NKWHFFAARD RKYPNGARSN RATVAGYWKS TGKDRAIKVD KRTIGTKKTL 240 VFHEGRPPTG KRTEWIMHEY YIDENECQAC PDMKDAFVLC KVTKRIDWTS ENGNEVGNNN 300 PQPQQANVAA ILAVSVEQPD TAASSIIGDE LPSDAATVAI PAHTTPDGND DLKEWLEELL 360 DTSFDPSANT AVDSVSAQLS PDEQNAESSN IGAMAPKVEL DYASPNQTVV DDTDFLLPDD 420 IHSMLYPGSD DFTSWQQTYF TAADPFSLSN NFMEEFQMKE LQLPLENNGP NLYEPADTGI 480 VVRTRHGGTS AASAPPYKAR LQQSLGRMVT SSSESINQTI KFVDNNGHLD LMTNVKHQKK 540 HVRDITSARQ SDAKKCGGHN NQGFLRGVQR AFRGCSATGL NILVALCMVG VAAAILHHGR 600 HRGGISL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-41 | 110 | 260 | 12 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU001723 | 0.0 | GU001723.1 Triticum aestivum cultivar Suwon11 NAC-domain transcription factor (NAC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191215.1 | 0.0 | NAC domain-containing protein 74-like | ||||
Swissprot | Q7GCL7 | 0.0 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | M7ZG10 | 0.0 | M7ZG10_TRIUA; NAC domain-containing protein 74 | ||||
STRING | TRIUR3_25713-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 5e-60 | NAC domain containing protein 86 |
Publications ? help Back to Top | |||
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