PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25576-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 527aa    MW: 61271.9 Da    PI: 8.1234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25576-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14381171499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + +++p + +++++g+   + +++le+++g s ++ +   k++++ vlt GW++Fv+  +L+  D+++F+++g+s+    v++f+k
  TRIUR3_25576-P1  38 DAMIIPEEVVRRFKGE--IPGEIKLETRNGYSHTIVV--AKYQEKLVLTVGWRQFVENYDLQMDDSLIFRYKGNSQL--SVMIFDK 117
                      569**********877..5558***************..********************************998777..9999986 PP
2B343.26.9e-141892651090
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      v++ ++ ++pk+f+++++g+   + +++le+++ rs ++ +   k+ g+ v+t GW +Fv+  gLk  D+++F+++g+s+f
  TRIUR3_25576-P1 189 VNSYSNTIVPKEFVQRFKGE--FPGEMILETQNRRSCKIGV--AKNNGKLVFTVGWGKFVETFGLKMDDTILFRYNGNSQF 265
                      555667899********888..6669***************..*********************************99988 PP
3B348.61.4e-154455251399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + +l++p+ +a+++ g+++    +   ++ gr+W+v ++ ++   +  l++GW++Fv++++Lk gD+++Fkl + +++++ v ++r+
  TRIUR3_25576-P1 445 EFLLTFPRYYAKKYLGEEPH---MY-LQRMGRKWDVWFSENNDC-K-NLRRGWRQFVEDHKLKIGDICLFKLLSIQSRTMEVYIIRA 525
                      567999********656443...44.667*********644444.4.39**********************99889999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-1922117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1823117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-1325116No hitNo description
PROSITE profilePS5086311.33525118IPR003340B3 DNA binding domain
SMARTSM010191.4E-728118IPR003340B3 DNA binding domain
PfamPF023624.8E-1238117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-17170275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-10173271No hitNo description
SuperFamilySSF1019361.02E-17174278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.63180273IPR003340B3 DNA binding domain
SMARTSM010190.0013184273IPR003340B3 DNA binding domain
PfamPF023628.2E-12188266IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-18426526IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-18428526IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-16431524No hitNo description
SMARTSM010191.1E-9433526IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957433526IPR003340B3 DNA binding domain
PfamPF023627.1E-14443525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGTSFGSCKL QDEQYQYYKN LDDEKKYFLV LMLGDFQDAM IIPEEVVRRF KGEIPGEIKL  60
ETRNGYSHTI VVAKYQEKLV LTVGWRQFVE NYDLQMDDSL IFRYKGNSQL SVMIFDKLGR  120
EKALSVVPAP FLPQVQDRRN EAHEIGYSQK MDVPRERRKK RTEYHYANLD DEKKYFLVLM  180
MDDFQDDMVN SYSNTIVPKE FVQRFKGEFP GEMILETQNR RSCKIGVAKN NGKLVFTVGW  240
GKFVETFGLK MDDTILFRYN GNSQFNDIIF DDDGCEKASS VFSDPSPPPV QERHRSATDT  300
VKSSHVHTQA IQTESFSIVE GMPMGSPCFK MEMDKSCQDN NTVISISSCE SSGLRESSSE  360
EEYVVHKVPR SDYVRKRKAG QLKDANGVTT LSSFKQGQLK DHYITAHKTK LTSTQKEVVK  420
QKVQSIYTEI PIFVAAICKY NVVVEFLLTF PRYYAKKYLG EEPHMYLQRM GRKWDVWFSE  480
NNDCKNLRRG WRQFVEDHKL KIGDICLFKL LSIQSRTMEV YIIRAND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186790.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_020186791.10.0putative B3 domain-containing protein Os08g0325100 isoform X2
TrEMBLT1N5870.0T1N587_TRIUA; Uncharacterized protein
STRINGTRIUR3_25576-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein