PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25447-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 291aa    MW: 31347 Da    PI: 8.512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25447-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-17853147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd  l  +v+++G ++W++I r ++ gR++k+c++rw + 
  TRIUR3_25447-P1  8 RGPWSPEEDGALRLLVERHGARNWTAIGRGVP-GRSGKSCRLRWCNQ 53
                     89******************************.***********985 PP
2Myb_DNA-binding51.62.1e-1660102145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++T+eEd  +++a+++lG++ W++Iar +  gRt++ +k++w+
  TRIUR3_25447-P1  60 RRPFTAEEDAAIARAHARLGNR-WAAIARLLR-GRTDNAVKNHWN 102
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.486158IPR017930Myb domain
SuperFamilySSF466892.28E-295101IPR009057Homeodomain-like
SMARTSM007178.1E-14756IPR001005SANT/Myb domain
PfamPF002494.7E-16853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-23960IPR009057Homeodomain-like
CDDcd001671.73E-131052No hitNo description
SMARTSM007171.3E-1459107IPR001005SANT/Myb domain
PROSITE profilePS5129417.50160109IPR017930Myb domain
PfamPF002494.9E-1460102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2161109IPR009057Homeodomain-like
CDDcd001672.41E-1162102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEGCDRIRGP WSPEEDGALR LLVERHGARN WTAIGRGVPG RSGKSCRLRW CNQLSPGVER  60
RPFTAEEDAA IARAHARLGN RWAAIARLLR GRTDNAVKNH WNCSLKRRLA DVGVAEEERP  120
GKRGGVTPES TSGSGSGSGS GSDRSDLSHR SVFGLGQVYR PVARAGGFEP ADCVMSRRHE  180
VEREEAEDPL TSLSLSLPGT ATEVQGFHHD SSHSHLHQPS PSSPSPSPPP APTSYPFSPE  240
FAAMMQQMIR DEVCRYISGV GCGANLPSMP QVVDGVMRAA AERAGGVART Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-3651094108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641591e-153AK364159.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162234.11e-148transcription factor MYB44-like
TrEMBLM8A6130.0M8A613_TRIUA; Transcription factor MYB44
STRINGTRIUR3_25447-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-46myb domain protein 77