PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25342-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 764aa    MW: 83053.8 Da    PI: 7.6402
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25342-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.5e-28283336155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  TRIUR3_25342-P1 283 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 336
                      79*******************.********************************8 PP
2Response_reg59.81.5e-2011420717109
                      HHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
     Response_reg  17 alekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                      +l +  +e+++++++++ al++l+e++  +D+i+ D+ mp+m+G++ll+     e++lp+i+++a +  +++ + +k Ga d+l Kp+ +eel 
  TRIUR3_25342-P1 114 LLARVAIEQATTCSQATRALAMLRENRgaFDVIISDVHMPDMNGFRLLELVGL-EMDLPVIMMSADSRTDLVMKGIKHGACDYLIKPVRMEELK 206
                      56677789999*************99999*******************87754.558***********************************98 PP

                      H CS
     Response_reg 109 k 109
                      +
  TRIUR3_25342-P1 207 N 207
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.4E-31125No hitNo description
PROSITE profilePS5011028.73196213IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.9E-14102209IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.05E-21112212No hitNo description
SuperFamilySSF521722.99E-25114216IPR011006CheY-like superfamily
PIRSFPIRSF0363921.7E-158114749IPR017053Response regulator B-type, plant
PfamPF000722.4E-17114207IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.4E-31122218No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29280341IPR009057Homeodomain-like
PROSITE profilePS5129411.948280339IPR017930Myb domain
SuperFamilySSF466891.58E-19281340IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25283336IPR006447Myb domain, plants
PfamPF002498.9E-7285334IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MKVLVVDDDQ TCLAVLKRML VQCRYDGDSQ RSCNPPFSRN CAPFSRFYLS GEWISDVCLI  60
KDCVLTRHSC GWVAIAIGSL KVTTFGGCTP RTELVPFRKL VQHPWRLDMW HHHLLARVAI  120
EQATTCSQAT RALAMLRENR GAFDVIISDV HMPDMNGFRL LELVGLEMDL PVIMMSADSR  180
TDLVMKGIKH GACDYLIKPV RMEELKNIWQ HVVRKKFGGS KEHEHSGSLD DTDRNRLTNN  240
DNEYASSAND GAEDSWKSQK KKRDKEEDDS ELESGDPSNN SKKPRVVWSV ELHQQFVNAV  300
NHLGIDKAVP KKILELMNVP GLTRENVASH LQKFRLYLKR IAQHHAGMAN PYSVPASSAQ  360
VASLGGLDFQ ALAASGQIPP QALAALQDEL LGRPTNSLVL PGRDQSSLRL AAVKGNKPHG  420
EQIAFGQPIY KVQNNSYAAL PQNSSAVGRM PSFSAWPNNK LGMSDSMSAL GHVNNSQNSN  480
MVLHELQQQP DTMLSGTLHT LDVKPSGIVM PSQSLNTFPA SEGLSPNQNS LIIPSQSSGF  540
LTGIPPSMKP ELVLPTSQSS NSLLGGIDLI NQASTSQPFI SSHGGNLPGL MNRNSNVMPS  600
QGISSFQTGN TPYLVNQNSM GMGSKPPGVL KTESTDSLNQ NYAYANHMDS GLLSSQSKNA  660
QFGFLQSPND ITGGWSSLQN MDGYRNTVGP SQPVSSSSSF QSSNAALGKL PDQGRGKNLG  720
FVGKGTCIPN RFAVDEIESP TNSLSHSIGS SGDIPDMFGF SGQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23282342464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519270.0JF951927.1 Triticum aestivum clone TaMYB44 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558456.10.0two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLM7YZZ20.0M7YZZ2_TRIUA; Two-component response regulator ARR2
STRINGTRIUR3_25342-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-89response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]