PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_25309-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22151.7 Da PI: 5.137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.6 | 1.1e-27 | 30 | 108 | 2 | 84 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr g W+ TRIUR3_25309-P1 30 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNR----GQWN 108 69***************************.99***************445556889*******************9....5565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-29 | 29 | 108 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.702 | 29 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-13 | 31 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSAIEMEKAT SDGEVVLGAG DEEDDDDVVL PGYRFHPTDE ELVTFYLRRK VARKSLRIEV 60 IREMDIYKHD PWDLPKASTV GGEKEWYFFC LRGRKYRNSI RPNRGQWNAP LAGPIPEQKP 120 QNPLSTADSF HQNDHSLAVA TNDFHKVEAL DGYLEEIARM MEVTDPAGFY DYRSYGSSAA 180 NRGPSFVRTL HSPAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-22 | 31 | 109 | 17 | 98 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374728 | 1e-124 | AK374728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3074N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195561.1 | 5e-63 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 7e-39 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M8A1I2 | 1e-144 | M8A1I2_TRIUA; NAC domain-containing protein 42 | ||||
STRING | TRIUR3_25309-P1 | 1e-144 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-38 | NAC domain containing protein 42 |