PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25303-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 80aa    MW: 9266.88 Da    PI: 7.182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25303-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.43.5e-161966148
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp 48
                     lppGfrF+Ptdeelvv+yL++k+ + +l++  vi++v ++y+++Pwd+p
  TRIUR3_25303-P1 19 LPPGFRFRPTDEELVVQYLRRKALALPLPA-AVIPDVqNLYSLDPWDIP 66
                     79****************************.89999999*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-181671IPR003441NAC domain
PROSITE profilePS5100519.8311980IPR003441NAC domain
PfamPF023653.4E-82063IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MERTPVMVRQ GGQEVLRQLP PGFRFRPTDE ELVVQYLRRK ALALPLPAAV IPDVQNLYSL  60
DPWDIPGFHC LYPCLRFCLD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151744.16e-39NAC domain-containing protein 83-like
SwissprotO227982e-18NAC41_ARATH; NAC domain-containing protein 41
TrEMBLM8A8L03e-51M8A8L0_TRIUA; NAC domain-containing protein 29
STRINGTRIUR3_25303-P15e-52(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-12NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]