PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_25136-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 306aa MW: 34760.8 Da PI: 9.5778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_25136-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	3e-53	15	142	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+GfrFhPtd e+++ yL +kv +k ++ ++ evd++k+ePw+Lp+k+k +ekewyfFs++d+ky+tg r+nrat++gyWkatgkdke++++ TRIUR3_25136-P1 15 PQGFRFHPTDVEIITSYLVPKVLNKAFDP-IAVGEVDLNKCEPWELPEKAKMGEKEWYFFSQKDRKYPTGIRTNRATTAGYWKATGKDKEIFHH 107 89**********************999.78***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++l+g+kktLvfykgrap+gekt+Wvmheyrle TRIUR3_25136-P1 108 aTTSLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 142 67788**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-59	5	177	IPR003441	NAC domain
PROSITE profile	PS51005	56.056	14	177	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MADHLQVQRQ QLKFPQGFRF HPTDVEIITS YLVPKVLNKA FDPIAVGEVD LNKCEPWELP 60 EKAKMGEKEW YFFSQKDRKY PTGIRTNRAT TAGYWKATGK DKEIFHHATT SLIGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LESGKQGTPS LPIDITTATA INASSKEEYV VCRIFHKSTG 180 LKKVVMSSYA IPMPMSMGGE EQHGFLESGT LPAFMGYGAS SSLVPPSSLP ASSSYQLHDT 240 GARSSMMGTA VLLMMNDRYF GNHHYQNMAT PPRPLVSFYH HDHHQQQQQQ QQQHMNKMTM 300 EILWPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	11	183	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-49	11	183	17	174	NAC domain-containing protein 19
3swm_B	6e-49	11	183	17	174	NAC domain-containing protein 19
3swm_C	6e-49	11	183	17	174	NAC domain-containing protein 19
3swm_D	6e-49	11	183	17	174	NAC domain-containing protein 19
3swp_A	6e-49	11	183	17	174	NAC domain-containing protein 19
3swp_B	6e-49	11	183	17	174	NAC domain-containing protein 19
3swp_C	6e-49	11	183	17	174	NAC domain-containing protein 19
3swp_D	6e-49	11	183	17	174	NAC domain-containing protein 19
4dul_A	4e-49	11	183	14	171	NAC domain-containing protein 19
4dul_B	4e-49	11	183	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167840.1	0.0	protein CUP-SHAPED COTYLEDON 2-like
Swissprot	Q9FLJ2	1e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	T1N413	0.0	T1N413_TRIUA; Uncharacterized protein
STRING	TRIUR3_25136-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-77	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]