PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_25015-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 300aa MW: 32858.7 Da PI: 5.4673 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.4 | 3.2e-05 | 244 | 265 | 34 | 55 |
HHHCTS-HHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRake 55 A+ +gL+ rq+ +WF N+R ++ TRIUR3_25015-P1 244 AAMTGLDPRQINNWFVNQRKRH 265 7889***************885 PP | |||||||
2 | ELK | 34.5 | 4.5e-12 | 191 | 212 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 EL+++Ll+KYsg+L+ L++EF+ TRIUR3_25015-P1 191 ELREMLLNKYSGCLSHLRTEFL 212 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.8E-14 | 45 | 89 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.6E-16 | 47 | 85 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.4E-22 | 96 | 147 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-20 | 100 | 146 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.039 | 191 | 211 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-6 | 191 | 212 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.9E-9 | 191 | 212 | IPR005539 | ELK domain |
SMART | SM00389 | 5.3E-5 | 213 | 272 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-14 | 213 | 277 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-17 | 216 | 270 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-6 | 231 | 264 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 2.79E-7 | 237 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEDLYSIHPG ISRRGEGDAA CSEVSGVAGD ASSPPPPPPP ADLTELMKTQ IAGHRRYPSL 60 LSAYIECRKV GATPEVASLL EEVGRPERRG GGAAAAAGEI GLDPELDEFM EAYCRLLSRY 120 KVELSRPLDE AASFLTTIRS QFTKLCGGGA TATSPHSDEM VESSEDEPCS GDTGASDAGM 180 QEQSSRLADR ELREMLLNKY SGCLSHLRTE FLKKRKKGKL PKDARLALVD WWNTHYRWPY 240 PTXAAMTGLD PRQINNWFVN QRKRHWKPSE DMRFALMEGV TGGGGGSSYD TTLCFGTDSM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 215 | LRTEFLKKRK |
2 | 212 | 216 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248600 | 0.0 | AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158428.1 | 1e-180 | homeobox protein knotted-1-like 10 | ||||
Swissprot | Q9FP29 | 1e-120 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | T1N3P3 | 0.0 | T1N3P3_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_25015-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-69 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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