PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25015-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 300aa    MW: 32858.7 Da    PI: 5.4673
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25015-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.43.2e-052442653455
                      HHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  34 AkklgLterqVkvWFqNrRake 55 
                      A+ +gL+ rq+ +WF N+R ++
  TRIUR3_25015-P1 244 AAMTGLDPRQINNWFVNQRKRH 265
                      7889***************885 PP

2ELK34.54.5e-12191212122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      EL+++Ll+KYsg+L+ L++EF+
  TRIUR3_25015-P1 191 ELREMLLNKYSGCLSHLRTEFL 212
                      9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.8E-144589IPR005540KNOX1
PfamPF037907.6E-164785IPR005540KNOX1
SMARTSM012569.4E-2296147IPR005541KNOX2
PfamPF037911.0E-20100146IPR005541KNOX2
PROSITE profilePS5121310.039191211IPR005539ELK domain
SMARTSM011883.5E-6191212IPR005539ELK domain
PfamPF037897.9E-9191212IPR005539ELK domain
SMARTSM003895.3E-5213272IPR001356Homeobox domain
SuperFamilySSF466892.52E-14213277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-17216270IPR009057Homeodomain-like
PfamPF059202.5E-6231264IPR008422Homeobox KN domain
CDDcd000862.79E-7237269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEDLYSIHPG ISRRGEGDAA CSEVSGVAGD ASSPPPPPPP ADLTELMKTQ IAGHRRYPSL  60
LSAYIECRKV GATPEVASLL EEVGRPERRG GGAAAAAGEI GLDPELDEFM EAYCRLLSRY  120
KVELSRPLDE AASFLTTIRS QFTKLCGGGA TATSPHSDEM VESSEDEPCS GDTGASDAGM  180
QEQSSRLADR ELREMLLNKY SGCLSHLRTE FLKKRKKGKL PKDARLALVD WWNTHYRWPY  240
PTXAAMTGLD PRQINNWFVN QRKRHWKPSE DMRFALMEGV TGGGGGSSYD TTLCFGTDSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215LRTEFLKKRK
2212216KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486000.0AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158428.11e-180homeobox protein knotted-1-like 10
SwissprotQ9FP291e-120KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLT1N3P30.0T1N3P3_TRIUA; Uncharacterized protein
STRINGTRIUR3_25015-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-69KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]